Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2154 ATGAGAGGCCTCGTCCGTCTTCCTCTACCTCTTCCTCTTCCTCTTCTTCCATTTCCGTGGAAGTCAACCTCCTCCTTCACTCTCCACCAACTCAGAACCCCCTTCAACCTCTCAATCCACGCTTCTTCATCACCCACTCCTTCTCCTTCTTCTTCTTCTTCTCCCACGCAAGAGCTCCTCACAGCCAGGGAGAGAAGGCGCCTGAGGAACTCGCGAAGGGAGAACAACGTCTACAACTGGAAGGAAGAGGTGGAAGAGAGCTTCATCAAGAAGAAGAAGAAGGAGAAGAAGTCATGGACCGAGCAGCTCAACCTCGATAACCTCGCTGATTTAGGTCCCCAGTGGTGGGTCCTTCGAGTTTCTCGCGTTAAAGCTCACTACACTGCCGAACTTCTAGCTCGCTCCCTCGCTAGAAACTTCCCTGACAAGGAATTCAAGGTATACATTCCATCTGTCAATGAGAAAAAGAGGTTGAAAAATGGTTCCCTGTCTGAAAAACCAAAACCCCTGTTCCCAGGATGCATTTTTTTGCGATGTGTACTGAACAAGGAGCTGCATGACTATATAAGAGAGGTTGATGGCATTGGAGGTTTCCTTGGTTCCAGGGTTGGAAGCATAAAGAGACAGATTAACAGACCAAGGCCGGTTGCTGATGAAGATATCAAAACAGTCTTCAGGCAGGCAAAAGAAGAACAAGAAAAAGCTGATCAAGCATTTGAGGAACAAGAGCGTGGTGCAGTCCAAAACTCTGGGATTCCCAATACGGAGTTAGAACCTGATGAAGTTTCTGATGCTTCTGTTGAGTCTAAGCCTAAAAGACGATCCAGAAAAACTTCTGACCAGCTCAGTGTTCCAGGTAGCAAGCTCTTTGTTCCAGGTTCTACTGTTAGGGTTGTATCTGGAACATTTTCAGGTTTTACCGGCACTCTCAAGAAGCTGAATCGCAAAACCAAAATGGCCACTGTACATTTTACACTATTTGGGAAGGAGAACATAGCAGATATAGATGTCAGTGAAATTGTTCCAGAGACTACTTGA 1038 0.4644 MRGLVRLPLPLPLPLLPFPWKSTSSFTLHQLRTPFNLSIHASSSPTPSPSSSSSPTQELLTARERRRLRNSRRENNVYNWKEEVEESFIKKKKKEKKSWTEQLNLDNLADLGPQWWVLRVSRVKAHYTAELLARSLARNFPDKEFKVYIPSVNEKKRLKNGSLSEKPKPLFPGCIFLRCVLNKELHDYIREVDGIGGFLGSRVGSIKRQINRPRPVADEDIKTVFRQAKEEQEKADQAFEEQERGAVQNSGIPNTELEPDEVSDASVESKPKRRSRKTSDQLSVPGSKLFVPGSTVRVVSGTFSGFTGTLKKLNRKTKMATVHFTLFGKENIADIDVSEIVPETT* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2154 345 Pfam Transcription termination factor nusG 114 222 IPR006645 GO:0140673
Amo12g2154 345 SMART nusgn_4 112 228 IPR006645 GO:0140673
Amo12g2154 345 MobiDBLite consensus disorder prediction 39 59 - -
Amo12g2154 345 CDD NGN_plant 114 225 - -
Amo12g2154 345 MobiDBLite consensus disorder prediction 232 286 - -
Amo12g2154 345 CDD KOW_NusG 290 340 - -
Amo12g2154 345 MobiDBLite consensus disorder prediction 263 279 - -
Amo12g2154 345 SMART kow_9 289 316 IPR005824 -
Amo12g2154 345 Pfam KOW motif 292 323 IPR005824 -
Amo12g2154 345 Gene3D - 113 229 IPR036735 GO:0006355
Amo12g2154 345 Coils Coil 221 241 - -
Amo12g2154 345 SUPERFAMILY N-utilization substance G protein NusG, N-terminal domain 113 230 IPR036735 GO:0006355
Amo12g2154 345 Gene3D - 289 341 IPR014722 -
Amo12g2154 345 PANTHER TRANSCRIPTION ANTITERMINATION PROTEIN RFAH 41 342 - -
Amo12g2154 345 MobiDBLite consensus disorder prediction 39 66 - -
Amo12g2154 345 PANTHER RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSG 41 342 IPR043425 -
Amo12g2154 345 SUPERFAMILY Translation proteins SH3-like domain 290 340 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2154 Amo-Chr12 99828127 99832450 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2154 - - aip:107627578 392.119