Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2150 ATGAAACGTTTCGGGTTTTCTCTTGCATGGGGTTTTGCAACAATTGTGCTAGCTTCTTCATTGGTTTCCGCTGCTGTTGTGGAATACACTTGGGATGTGGAGAATTTTACCGTGGAGCGTTTGTGTGACTCGCATGTAGTGACTGGAGTGAATGGAAGCATTCCAGGGCCAGCAATTAACGTTAGAGAGGGTGACACTGTAATTATACACGTTAGAAACAAGTCACCCTATAATGTTACTCTTCATTGGCATGGAATATTTCAACTTGCAAGCCAATGGTCAGATGGTCCAGAATATGTAACTCAATGTCCGATACCTCCAGGTGGCAGTTACAGATACAAATTCACCATAACAAAACAGGAAGGAACACTTTGGTGGCATGCACACTCATCTTTCTTACGTTCCAATGTTTATGGAGCCCTTATTATTCGTCCTCGCCGGGGACACTCCTACCCATTCCCTAGAGTTTACCAAGAAGTACCTATTTTGCTCGGAGAGTGGTGGAATGTTAATGTTGAGGATGTTGGAAACAACGCATCACAAGGAATAGTTCCGAGAAATTCAGATGCTTTCACAATTAATGGCTTGCCTGGCGATTTATATAATTGTTCCCAAAATCAGACTTACCGGCTGAACGTGAAACAAGGAAAAAGGTACTTGTTGCGAATTATCAATGCTGCACTGAATGAACAACACTTCTTCAAGATTGCGAACCACAGCTTCACGGTTGTAGCCATTGATGCTAGCTACACTCGGCAGTATAAGACGGACGTTATAGTATTGGCACCAGGGCAAACTGTTGATGCAATCATCACAACAAACCAAAGCGTGGGTTCTTACTACATGGCATTCACAGAATACAGATCCTCAAATGTGATAAACAATAACTCAACAACAAGGGGAGTGTTGGTTTATGAGGGTGCATCACAATCATTAGCCCCTATAATGCCTGACCTACCAGATCAATTTGACACACCAACTGCACACAAGTTCTACACCAACATTACAGGTTTAGCCGGTGGCCCTCATTGGATCCCCGTTCCACGAAGCGTGGACGAAAACATGTTCATCGCATTTGGGATTGCACTAACACCATGCAACCTTCCAGGACCAAGTGGTTGCATTAATCTTGGAGGAATAAATGTGTTATTATCCGCAAGCATGAACAATGAGTCTTTTGTGTTACCAAAGGGTAGAGGGTCCTCTATGTTAGAGGCATTGTACCACAACAATGTTAGTGGAGTCTACACTAGAGATTTCCCAAGTCAACCTCCACTTGTGTTTGACTACACTGATCCTTCTCTAGCTTTTGGTAACACCACCTTAGCCTTTGCACCTAAATCAACAAAGGCCAAGCCAGTGAAGTTCAATTCAACGGTGCAAATTGTGCTTCAAAATACGGCTATTCTTGGTGCGGAGAACCACCCTATTCACGTTCATGGCTTTAATTTCTATGTTTTGGCTCAAGGCTTTGGGAATTATAATGCTTCTGTAGATGAAAGTAAGTTTAATTTTGTTAATCCTCAAGTGCGTAACACAATTGCTGTGCCTGTGGGAGGATGGGCTGTCATCAGATTCCGAGCCGATAATCCGGGTATTTGGCTTGTACATTGCCATTTGGAAAATCATTTGCCATGGGGTTTAGCCATGAGTTTTGAGGTTGAAAATGGACCCACTCCTTCAACAAGATTGCCTCCACCGCCGGCTGATCTACCAAAGTGCTAA 1725 0.4336 MKRFGFSLAWGFATIVLASSLVSAAVVEYTWDVENFTVERLCDSHVVTGVNGSIPGPAINVREGDTVIIHVRNKSPYNVTLHWHGIFQLASQWSDGPEYVTQCPIPPGGSYRYKFTITKQEGTLWWHAHSSFLRSNVYGALIIRPRRGHSYPFPRVYQEVPILLGEWWNVNVEDVGNNASQGIVPRNSDAFTINGLPGDLYNCSQNQTYRLNVKQGKRYLLRIINAALNEQHFFKIANHSFTVVAIDASYTRQYKTDVIVLAPGQTVDAIITTNQSVGSYYMAFTEYRSSNVINNNSTTRGVLVYEGASQSLAPIMPDLPDQFDTPTAHKFYTNITGLAGGPHWIPVPRSVDENMFIAFGIALTPCNLPGPSGCINLGGINVLLSASMNNESFVLPKGRGSSMLEALYHNNVSGVYTRDFPSQPPLVFDYTDPSLAFGNTTLAFAPKSTKAKPVKFNSTVQIVLQNTAILGAENHPIHVHGFNFYVLAQGFGNYNASVDESKFNFVNPQVRNTIAVPVGGWAVIRFRADNPGIWLVHCHLENHLPWGLAMSFEVENGPTPSTRLPPPPADLPKC* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2150 574 Gene3D - 378 574 IPR008972 -
Amo12g2150 574 CDD CuRO_3_LCC_plant 415 557 IPR034289 GO:0005507
Amo12g2150 574 TIGRFAM laccase: laccase 25 574 IPR017761 GO:0046274|GO:0048046|GO:0052716
Amo12g2150 574 Gene3D - 157 340 IPR008972 -
Amo12g2150 574 Pfam Multicopper oxidase 34 146 IPR011707 GO:0005507
Amo12g2150 574 Gene3D - 14 145 IPR008972 -
Amo12g2150 574 Pfam Multicopper oxidase 159 308 IPR001117 -
Amo12g2150 574 CDD CuRO_1_LCC_plant 29 145 IPR034288 GO:0005507
Amo12g2150 574 Pfam Multicopper oxidase 420 556 IPR011706 GO:0005507|GO:0016491
Amo12g2150 574 ProSitePatterns Multicopper oxidases signature 2. 537 548 IPR002355 GO:0005507
Amo12g2150 574 ProSitePatterns Multicopper oxidases signature 1. 532 552 IPR033138 -
Amo12g2150 574 PANTHER LACCASE-7 11 574 - -
Amo12g2150 574 SUPERFAMILY Cupredoxins 383 574 IPR008972 -
Amo12g2150 574 SUPERFAMILY Cupredoxins 22 170 IPR008972 -
Amo12g2150 574 PANTHER MULTI-COPPER OXIDASE 11 574 IPR045087 -
Amo12g2150 574 SUPERFAMILY Cupredoxins 153 341 IPR008972 -
Amo12g2150 574 CDD CuRO_2_LCC_plant 160 305 IPR034285 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2150 Amo-Chr12 99721177 99726080 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2150 K05909 - gmx:100812336 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2150 12 99721177 99726080 Amo12g2150 12 99721177 99726080 ECH
Amo12g2150 12 99721177 99726080 Amo02g2426 02 77119136 77126537 hybridization