Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1603 ATGGTAGGAAGCATTACCGGAACAGTTACCAATGCTCACTCGAACAGTAACGGTAACGGTAACGGATCTGTTCAGAACTTGAATTGCTTAGAGGAGAAGCTTGAGGAGCTACGCAGCCTTCTTGGAAAATCCAACAGTGACCCGCTGAAAATCGTTAGCGTCGGAGCTGGCGCCTGGGGAAGTGTCTTCGCGGCATTGCTTCAAGATTCGTACGGACAATTCCGGGAGAAGGTTCAGATCAGGATATGGAGAAGGCCGGGCAGGGCGGTGGACAGGGCCACGGCGGAGCATCTTTTTGAAGTAATAAACTCGAGAGAGGACGTTTTGCGGCGGTTGATCCGGCGCTGCGCGTACCTTAAGTACGTGGAGGCGAGGCTTGGTGACAGGACTTTGCTTGCAGATGAGATTCTAAAAGATGGATTCTGTTTGAACATGATTGAAACTCCTCTTTGCCCCTTGAAAGTTGTAACTAACTTGCAGGAAGCTGTTTGGGACGCTGATATTGTTGTCAATGGCTTGCCTTCTACCGAGACACGCGAGATTTTCGAAGAGATTAGTAAGTATTGGAAGGAGAGGATCACAATGCCTGTCATAATCTCTCTTTCAAAGGGTATAGAGGCTGCACTCGATCCTCTTCCGCATATTATAACTCCAACCAAAATGATTAGCCAAGCAACTGGATTGCCTATGGAGAACATACTTTATCTTGGGGGTCCAAATATAGCATCTGAAATCTACAACAAGGAGTATGCTAATGCTCGCATATGTGGTGCTGAGAAATGGAGGAAACCTCTGGCAAAGTTCCTAAGACAACCTCATTTTATAGTCTGGGACAACAGTGACCTTATCACTCATGAAGTCATGGGTGGCTTGAAAAATGTATATGCAATTGGGGCAGGAATGGTAGCTGCCCTTACAAATGAGAGTGCGACAAGTAAATCCGTATACTTCGCACATTGCACATCGGAGATGATATTTATCACTCATTTGTTGGCTGAAGAACCTGAGAAACTCGCAGGGCCATTATTAGCTGACACTTATGTGACTTTGTTAAAAGGGCGTAATGCATGGTATGGCCAGATGCTTGCTAAGGGCGCATTAAGCCCAGACATGGGTGACAGCATTAGTGGCAAAGGAATGATTCAGGGTGTTTCTGCAGTGAAGGCATTCTTTGAACTTCTGAGCCAATCAAGCTTGAATGTGTTGCACCCTGAAGAAAACAAACCTGTTGCCCCTGTTGAGCTCTGCCCAATCCTCAAGACATTATATAAGATATTGATATCAAGGGAACAATCATCACAAGCTATTCTCCAGGCCCTGAGGGATGAGAATCTTAATGATCCCCGTGAACGCATTGAGATTGCACAAAGCCATGTCTTTTATAGGCCTTCACTTCTTGGAAAACCATGA 1410 0.4582 MVGSITGTVTNAHSNSNGNGNGSVQNLNCLEEKLEELRSLLGKSNSDPLKIVSVGAGAWGSVFAALLQDSYGQFREKVQIRIWRRPGRAVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLLADEILKDGFCLNMIETPLCPLKVVTNLQEAVWDADIVVNGLPSTETREIFEEISKYWKERITMPVIISLSKGIEAALDPLPHIITPTKMISQATGLPMENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRQPHFIVWDNSDLITHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGALSPDMGDSISGKGMIQGVSAVKAFFELLSQSSLNVLHPEENKPVAPVELCPILKTLYKILISREQSSQAILQALRDENLNDPRERIEIAQSHVFYRPSLLGKP* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1603 469 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 49 281 IPR036291 -
Amo12g1603 469 Pfam NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 281 435 IPR006109 GO:0004367|GO:0005975
Amo12g1603 469 Gene3D - 281 441 IPR013328 GO:0016491
Amo12g1603 469 PANTHER GLYCEROL-3-PHOSPHATE DEHYDROGENASE 12 469 - -
Amo12g1603 469 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 281 436 IPR008927 -
Amo12g1603 469 Coils Coil 27 47 - -
Amo12g1603 469 PRINTS NAD-dependent glycerol-3-phosphate dehydrogenase signature 53 70 IPR006168 GO:0004367|GO:0006072|GO:0009331
Amo12g1603 469 PRINTS NAD-dependent glycerol-3-phosphate dehydrogenase signature 274 298 IPR006168 GO:0004367|GO:0006072|GO:0009331
Amo12g1603 469 Gene3D - 31 112 - -
Amo12g1603 469 Pfam NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 153 255 IPR011128 GO:0016616|GO:0046168|GO:0051287
Amo12g1603 469 Gene3D - 129 277 - -
Amo12g1603 469 MobiDBLite consensus disorder prediction 1 22 - -
Amo12g1603 469 PANTHER GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(+)] 12 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1603 Amo-Chr12 73855941 73861101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1603 1 469 Acyl Lipid Metabolism Gene Families AT2G41540 85.106 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1603 K00006 - gmx:100810871 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1603 12 73855941 73861101 Amo12g1603 12 73855941 73861101 ECH
Amo16g0266 16 4029538 4032295 Amo12g1603 12 73855941 73861101 PCT
Amo12g1603 12 73855941 73861101 Amo16g0266 16 4029538 4032295 PCT