Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo12g0552 | ATGCAAGAAATGTTTTCAGTGTATCTCGGAAGTCGGTCGCGAATATCGTTTATCGAACTGTATATCGAGTTCGAGCAATCTGCAGCAGACCGAGATATTGAATTGCAGGATTACAACAGTGATAGTGAAGAAGAGTTCGAAAGTAACTACGTGGTCGTTGATCCGGGTGTAGACGAAGATCAAGCTGACGATGCTATGGTGGCAGATGTGGAGGATGTGGCAAATGCACTAGCAAATCAGGAGCCGTTTGTGGAGCCGAGTTTCATGCGGTCGTTGGATTTGGAGGCCATGCATGCACCGGAGTTTCCTCAATATGTAAATGCAGCAGAGCTTCCCCTTCTGCCGGATGGTGAATTTACTGTGGGAATGGAATTCAGTTCTAGGGAGGCAGTAATTAAGGCGATGAAAGATTATACAATCCGCAGAGGTGTAGATTATCGGGTGCATGAGTCAGAACCCACGACATTTTATGCTAAATGCACCCAGTATGATGCAGGATGTGATTGGCTGATCAGAGTGAGCAAGATGTCCAGAAAGTTCTGTTGGGAGATAAGGAGGTACAATGGTAGTCACACCTGTACTAGGGCCACCATTTCTCAAGATCATTCGAAGCTGGATTCCAACACAGTTGCAGAAGCAATAAAGCCATTGGTAGAAGTTGACCCGTCTATTAGGGTGAAATCAGTTATTGCGGAAGTACAATCAAAGTTTAACTACACCATTAGTTATCGCAAAGCATGGTTGGCAAAGCAAAAGGCAGTGGAGTCAATTTTCGGAGGATGGGAAGCTTCGTACGAAGCCTTGCCGATATGGTTTGAGGCTATGTGTCACAAGGAGCCATCCGCAGTTGTTCATTTCCAAACAATGCCTGCGTATCAGGGAGATGACTTGGTTCCTAATATTCGTTACTCGCGAACAATTCGCGAGTACGAGACGCGTTATCAGCGTTTGCGTGAGCGGGGTGAGGCTTATACCAACTGGTTGGATCGCATACCGCGTGAGCAGTATGCTTTAGCATTTGATGGGGGATATCGATGGGGTCATATGACAACCAATCTTGTGGAATGCATCAACTCCGTACTGAAAGGGGCTCGCAATCTTCCAGTCACTGCACTTGTGAAGGCAACGTTTTACAAGCTTAATGAATTGTTCACCCGGAAAAGAGCCGAGGCTGAGGCTAGAATTAATGCAGGACATGTGTTCTCTGAGTTTGTAACCTCCAAACTGCAAGCAAATCAGCGGGCAGCTGGTAACATTCAAGTTAGTTGCTTTGACCGACAAAATGAGGTATTCGAAGTGCGTGAGTGTCCTAGTGGTGTGGAGTATGCAGTGGATCTCCGTCAACAAAGGTGTGACTGTGGTGAGTTCCAAGTTGACCGGCTTCCGTGTCGACATGTGTTTGTTTGTTGTGCAAACCAACGTCTGGATTGGCAACTGTATGTACATGATGTTTACAAGATGGACCAGGTTCGACGAGTATACAGGGCTAGATTTAAGCCACTTGGGAATCCAACAACATGGCCTGTTTATCATGGACCTCGATTCGTTGGTAATCCATTCCTTAGACGGGTATCCAAAGGTCGGCCAAGGATGACTCGTTTCTTGAATGAGATGGACACTCGAATGTTGCGTCGTCCTAGGAGATGTAAGCAATGCGGGGCCGAGGGCCACAACCGTAGTAGATGTCGTCAAGGTGGTGGTGAAAATAATCCGGGTGCGAATTAG | 1725 | 0.4678 | MQEMFSVYLGSRSRISFIELYIEFEQSAADRDIELQDYNSDSEEEFESNYVVVDPGVDEDQADDAMVADVEDVANALANQEPFVEPSFMRSLDLEAMHAPEFPQYVNAAELPLLPDGEFTVGMEFSSREAVIKAMKDYTIRRGVDYRVHESEPTTFYAKCTQYDAGCDWLIRVSKMSRKFCWEIRRYNGSHTCTRATISQDHSKLDSNTVAEAIKPLVEVDPSIRVKSVIAEVQSKFNYTISYRKAWLAKQKAVESIFGGWEASYEALPIWFEAMCHKEPSAVVHFQTMPAYQGDDLVPNIRYSRTIREYETRYQRLRERGEAYTNWLDRIPREQYALAFDGGYRWGHMTTNLVECINSVLKGARNLPVTALVKATFYKLNELFTRKRAEAEARINAGHVFSEFVTSKLQANQRAAGNIQVSCFDRQNEVFEVRECPSGVEYAVDLRQQRCDCGEFQVDRLPCRHVFVCCANQRLDWQLYVHDVYKMDQVRRVYRARFKPLGNPTTWPVYHGPRFVGNPFLRRVSKGRPRMTRFLNEMDTRMLRRPRRCKQCGAEGHNRSRCRQGGGENNPGAN* | 575 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo12g0552 | 574 | MobiDBLite | consensus disorder prediction | 553 | 574 | - | - | |
| Amo12g0552 | 574 | SMART | 26again6 | 449 | 476 | IPR006564 | GO:0008270 | |
| Amo12g0552 | 574 | Pfam | MuDR family transposase | 119 | 179 | IPR004332 | - | |
| Amo12g0552 | 574 | Pfam | SWIM zinc finger | 444 | 466 | IPR007527 | GO:0008270 | |
| Amo12g0552 | 574 | ProSiteProfiles | Zinc finger CCHC-type profile. | 547 | 564 | IPR001878 | GO:0003676|GO:0008270 | |
| Amo12g0552 | 574 | PANTHER | POLYPROTEIN, PUTATIVE-RELATED | 322 | 562 | - | - | |
| Amo12g0552 | 574 | PANTHER | POLYPROTEIN, PUTATIVE-RELATED | 124 | 286 | - | - | |
| Amo12g0552 | 574 | PANTHER | FAMILY TRANSPOSASE, PUTATIVE ISOFORM 1-RELATED | 124 | 286 | - | - | |
| Amo12g0552 | 574 | ProSiteProfiles | Zinc finger SWIM-type profile. | 442 | 474 | IPR007527 | GO:0008270 | |
| Amo12g0552 | 574 | Coils | Coil | 300 | 320 | - | - | |
| Amo12g0552 | 574 | PANTHER | FAMILY TRANSPOSASE, PUTATIVE ISOFORM 1-RELATED | 322 | 562 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo12g0552 | Amo-Chr12 | 9773215 | 9775796 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo12g0552 | - | - | ahf:112721001 | 753.821 |