Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0433 ATGAGAATAAAGGTAACTGTTGTGTGGTGTGTTTGGATTCTGGCTCTGCTATGGCAGCATCACGTGGTGGCAAGGTTCGTGGTGGAGAAGAACAATCTGAAGATCACGTCTCCCAGATCACTCAGAGGTATCTACGAATGCGCAATTGGAAACTTCGGTGTACCGAAGTACGGAGGTGCCATGATCGGTGCTGTGGTTTATCCAAAGGCCAATCAGAACGGATGCAACCGATTCGAAGGCGCCGACGCCTCTCTCTTCGCTTCTAGGCCTGGTGGATTCCCGACCTTCCTTCTTGTTGATCGTGGAGAGTGCTACTTCACGTTAAAGGCATGGAACGCACAGAAGGGCGGAGCAGCGGCGATTCTGGTGGCGGATGACAGGATAGAGCCGTTGATAACGATGGACACGCCGGAGGAAGGGACCGGAGCAAACGATGACGACTACATCGAGAAGATTAACATCCCGTCGGCGCTGGTGAGCAAGGGGCTCGGGGACAGCATCAAGGCGGCTCTGGCGAGCGGCGATATGGTGAACGTGAATCTTGATTGGAGGGAGGCTCTTCCGCATCCAGACGACAGAGTTGAGTATGAGTTTTGGACAAACAGCAACGACGAGTGCGGAGCGAAATGTGACGCTCAACTCAGCTTCGTTTCAAGCTTCAAAGGTGCAGCGCAGTTACTTGAGCAGAAAGGCTTCACTCAATTCACACCTCACTTCATCACTTGGTACTGCCCTCAGGCATTCATCCTCAGCAAACAGTGTAAGGCTCAGTGCATCAACAATGGCAGGTACTGCGCCCCTGACCCTGACCAGGACTTTTCCCGAGGCTACGACGGCCGAGATGTCGTCATTCAAAACCTCCGCCAGGCTTGTTTCTTTAAAGTAGCTAATGAGAGCAAGAAGCCTTGGCAATGGTGGGACTATGTCACGGACTTCGCCATTCGCTGCCCTATGCGAGAGAATAGGTACACTCAGGAATGCTCGGATCAAGTGATTGCATCTCTTGGTGTTGATGTGAAGAAGATAAGAGATTGTGTTGGAGATCCTAATCTGGATGCTGAGAATCCAGTTCTTAAGAAGGAACAGGATGCACAGATTGGGAAAGGCACTCGCGGTGATGTTACTATTCTGCCTACTCTCATCATAAACAACAGACAGTATAGAGGCAAGTTGTCAAGAGAAGCAGTACTCAAGGCCATCTGTTCTGCTTTCAAAGAAACCACTGAGCCATCAATTTGCTTAACTCCAGACATGGAAACAAACGAGTGCCTCGTAAACAATGGCGGTTGTTGGCAGGACAAATCTGCTAACATTACTGCATGCAGGGACACTTTCAGAGGAAGAGTGTGTGAGTGCCCTGTTGTGCAAAATGTGAAATTTGTTGGTGACGGATATACTCATTGTGAAGCAACGGCACGCTTGAGGTGTGCAGTGAACAATGGAGGTTGTTGGAAGGGAGCCCAAGAAGGGAGGGTTTACTCTGCTTGCATTGATGACCACACAAAAGGTTGCAAGTGCCCTCCTGGATTCAGGGGTGATGGAGTCCACTCCTGTGAAGATATCGATGAGTGCAAGGAGAAATTAGCCTGCCAGTGCCCAGAGTGCAATTGCAAGAACACCTGGGGAAGTTATGAATGCAAATGCAATAGCGGTTTGTACTACATGCGAGACAATGATATGTGTATAGGCAAATATACGGCTTCAGTGAACAGTGGAGGCTTTATCATTTGGGTTATTTTTCTGGTCATAGCTATTGTTGGTTTAGTGGGATATGCATTTTACAAGTACAGAATCCAGAGATATATGGATTCTGAGATAAGAGCAATTATGGCCCAATACATGCCATTGGATAATCAACCCGATGCCTCTGTTCAACTTCAACAAGGTGTGTAG 1893 0.4865 MRIKVTVVWCVWILALLWQHHVVARFVVEKNNLKITSPRSLRGIYECAIGNFGVPKYGGAMIGAVVYPKANQNGCNRFEGADASLFASRPGGFPTFLLVDRGECYFTLKAWNAQKGGAAAILVADDRIEPLITMDTPEEGTGANDDDYIEKINIPSALVSKGLGDSIKAALASGDMVNVNLDWREALPHPDDRVEYEFWTNSNDECGAKCDAQLSFVSSFKGAAQLLEQKGFTQFTPHFITWYCPQAFILSKQCKAQCINNGRYCAPDPDQDFSRGYDGRDVVIQNLRQACFFKVANESKKPWQWWDYVTDFAIRCPMRENRYTQECSDQVIASLGVDVKKIRDCVGDPNLDAENPVLKKEQDAQIGKGTRGDVTILPTLIINNRQYRGKLSREAVLKAICSAFKETTEPSICLTPDMETNECLVNNGGCWQDKSANITACRDTFRGRVCECPVVQNVKFVGDGYTHCEATARLRCAVNNGGCWKGAQEGRVYSACIDDHTKGCKCPPGFRGDGVHSCEDIDECKEKLACQCPECNCKNTWGSYECKCNSGLYYMRDNDMCIGKYTASVNSGGFIIWVIFLVIAIVGLVGYAFYKYRIQRYMDSEIRAIMAQYMPLDNQPDASVQLQQGV* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0433 630 ProSitePatterns Calcium-binding EGF-like domain signature. 520 546 IPR018097 GO:0005509
Amo12g0433 630 SUPERFAMILY PA domain 97 174 IPR046450 -
Amo12g0433 630 Gene3D Laminin 474 558 - -
Amo12g0433 630 CDD EGF_CA 520 551 - -
Amo12g0433 630 PANTHER VACUOLAR-SORTING RECEPTOR 1 14 610 - -
Amo12g0433 630 SMART egfca_6 520 562 IPR001881 GO:0005509
Amo12g0433 630 Pfam PA domain 63 167 IPR003137 -
Amo12g0433 630 Gene3D Glutaredoxin 269 405 - -
Amo12g0433 630 Gene3D - 23 190 - -
Amo12g0433 630 Gene3D Laminin 414 459 - -
Amo12g0433 630 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 14 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0433 Amo-Chr12 7103290 7106880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0433 11 627 Miscellaneous Gene Families AT2G30290 67.633 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0433 - - gmx:100815266 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0433 12 7103290 7106880 Amo02g0513 02 6363103 6366541 hybridization