Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0316 ATGCATTGCAAAATATGTAGCTGCAAAGATTCAAGAGAATATATATCAAATGTGAAGTGTCCTGAACCAAAATGCAGAGGAATATTGGAGCCTCAGAATTGCATGTCAATAATTCCAAAGGAAGTGTTTGAAAGATGGGAGAATGCATTTTGTGAGAATCTTGTTCTTGCAACATCAAGGAAATTCTATTGCTCTTTCAAGGATTGTTCAACAATGTTGGTGAATGATGATGGGAATGAAGTTGTGACTTGTTTTGAGTGTCCAAATTGTCATAGATTGTTCTGTGCACAGTGTAAAGTTGCATGGCATGGTGGAATGGAATGTGGTGAGTTTATGGGTTTGAATGAAAATGAAAGAGAGAAGGAAGATCTTATGGTGATGAATCTTGAAGAGGCTAAGAGATGGAGAAGGTCAAGAATGGCATTAAGTATTGACGGCAATAATCACAATACTAATAATGAAGATCCAAAAGTTGAAATGATGAAACCACAGAAGAATGGCGTAGAGCTACCCTTTTGTGGAAGATGCTGTGATTTCAAGCTAACGTGGGAGATGTTTAAGATTCTAAAATGTGGCCATAATTTTTGTAGGTTTTGCATGCATGAATACGTTGCTTCATGTCTCAGGGACAATATCATCATGGTGCCTTGTCCTGATCCAAAATGCAAGGTTAAGTATGGACCTGAATACTTTTGCTCTCTTCTTCCATTTGAAGTGTTCAAGAGATGGCAGAAAGTGATTAAAGATTGTAACACTCCAATTTTGGATAAACAATTAGACAAGAATCCTATTCATGTTGCTGATGATGAAGAGAATAACGATGTCAAAGAAGATGCTACAATACCTCAGAATTGCATGTCAATAATTCCAAAGGAGGTGTTTGAAAGATGGGAGAATGCACTTTGTGAGAATCTTGATTGTTCAACAATGTTGGTGAATGATGATGGGAATGAAGTTGTGACTTGTTCTGAGTGTCCAAATTGTCATAGATTGTTTTGTGCACAGGGTAAAGTTGCATGGCATGGTGGAATGGAATGTGGTGAGTTTATGGGTTTGAATGAAAATGAAAGAGAGAAGGAAGATCTTATGGTGATGAATCTTGCAAAGGCTAATAAGAGATGGAGAAGGTTTGGTTTCTTTAATTACTTCTATATTAATAATCACAATATTAATAATGAAGATCCAATGGTTAAGATGATGAAACCACATAATAAAGGCATAGAGCTATCAAGAAGCTGTGATTTTAAGCCATCGTTTTGCATGCAAGAATACATTGCTTCATGTCTTAGGGACATTATTGTCATTGTGCCTTGCCCTAATTCAAAATACAAGATTGAGTATGAATCTGAATATTTTTGTTTTCTTCTTCTTTTTGAATGTAAAGTTGCATGGCATGGTGGAATGGAATGTGGGGAGTTTATGAGTTTGAATGAAAATAAAAGAGCGAAGGAAGATTTATGGTGA 1464 0.3607 MHCKICSCKDSREYISNVKCPEPKCRGILEPQNCMSIIPKEVFERWENAFCENLVLATSRKFYCSFKDCSTMLVNDDGNEVVTCFECPNCHRLFCAQCKVAWHGGMECGEFMGLNENEREKEDLMVMNLEEAKRWRRSRMALSIDGNNHNTNNEDPKVEMMKPQKNGVELPFCGRCCDFKLTWEMFKILKCGHNFCRFCMHEYVASCLRDNIIMVPCPDPKCKVKYGPEYFCSLLPFEVFKRWQKVIKDCNTPILDKQLDKNPIHVADDEENNDVKEDATIPQNCMSIIPKEVFERWENALCENLDCSTMLVNDDGNEVVTCSECPNCHRLFCAQGKVAWHGGMECGEFMGLNENEREKEDLMVMNLAKANKRWRRFGFFNYFYINNHNINNEDPMVKMMKPHNKGIELSRSCDFKPSFCMQEYIASCLRDIIVIVPCPNSKYKIEYESEYFCFLLLFECKVAWHGGMECGEFMSLNENKRAKEDLW* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0316 487 ProSiteProfiles TRIAD supradomain profile. 1 221 IPR044066 -
Amo12g0316 487 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 164 247 IPR031127 GO:0004842|GO:0016567
Amo12g0316 487 SUPERFAMILY RING/U-box 170 249 - -
Amo12g0316 487 SUPERFAMILY RING/U-box 44 111 - -
Amo12g0316 487 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 282 372 IPR031127 GO:0004842|GO:0016567
Amo12g0316 487 Pfam IBR domain, a half RING-finger domain 44 108 IPR002867 -
Amo12g0316 487 ProSitePatterns Zinc finger RING-type signature. 191 200 IPR017907 -
Amo12g0316 487 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 13 134 IPR031127 GO:0004842|GO:0016567
Amo12g0316 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 55 IPR013083 -
Amo12g0316 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 254 IPR013083 -
Amo12g0316 487 SUPERFAMILY RING/U-box 300 349 - -
Amo12g0316 487 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 164 247 - -
Amo12g0316 487 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 282 372 - -
Amo12g0316 487 SMART ibrneu5 295 346 IPR002867 -
Amo12g0316 487 SMART ibrneu5 44 108 IPR002867 -
Amo12g0316 487 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 13 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0316 Amo-Chr12 5308098 5350826 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0316 K11975 - egr:104437955 244.973