Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0295 ATGGTAGTAGCTGCAGGTTCTAGTGTTGCTAAGCTCAACTTGAGAAAAGGGAAGGGTTCTTCTTATAATGTTATGAGCGGTGGTGATAACAGTGATGGAGATCTTTCCATTGTTAGTAATAACAGTGACAGTGAGTGTTGTTCATCATCAATGGTGGAGGTGGAAAGGGGTCCTTCATGTGTTTCATTCACCACTTTCAATATCTTGGCTCCTATTTACAAAAGGATTGATCCAAAGAACCAAAGCCTCAGGGAAAGTGAGTTCAGGTACTCCTGGTTGTCCAGGAATGAAAGTATTCTGAATTCCTTGCTTGCTGAATCATCTTCCATAATGTGCCTTCAGGAATTTTGGGTTGGAAATGAAGAACTTGTTCACATGTATGAGGAGAAACTAGGGGATGCTGGTTACCATCTCTTCAAGCTTGCTCGAACCAACAACCGGGGAGATGGTCTTCTTACTGCTATACACACAAAATATTTACATGTTGTGAATTATCGGGAGTTGTTTTTAAATGATTTCGGTGATCGTGTTGCTCAGTTGTTACACGTTCAGTCTATTGCCCCTGTTTCGCAAAACCAAATGGGAAGTCTTCACCAAGAGTTTCTTATTGTGAACACACACCTGTTATTTCCTCACGATTCGAGTCTATGTATAGTGAGATTGCATCAGGTTCACCAAATTTTGCAGCATGTGGAATTGTTTCAAAAAGAAAACAGGCTGAAACCGATGCCTATTATACTCTGCGGTGACTGGAATGGAAGTAAGAAAGGGCATGTATACAAGTTTCTTAGGTCACAAGGGTTTGTTTCATCATATGACTGTTATGCAGATTCCCACAAGCAGTGGGTTAGTCACCGAAATCATAGAGGAAATATCTGCGGTGTCGACTTCATTTGGCTTTGCAATCCAAACCAACCACGGAAACCTTTGAAGACAAGTTGGGCTGAAGCTGTTTTTAGCATACTCAAGTACCAGCTACGAAAAGCTTCGCTGTCTGAAGACAGTGCATTTACATTTCTGAAGGGAGACAATTGTGCCGATGCTGTGACATATCTTAGTTTCCATGAGGCACTGCGGCAGGTAAAATTAGTTGATGTGCCTAATGGCTTATGCATTCAGCAGTTCCAAGATCTATGGAATCAAGCAGATGTTGATGGAAATGGGGTCATCGACTTAGAGGAATTCAAGCAAAAGATTTGGAACTCTACATGTCCAGAACCTGTATTGGAAAGCTTCAATGGTTGCATGGAGGATGTGAATGCGACGAATGAGCACGAAACCATCGGCTTTAAGGTGAAGACAGCGATGTTGTTCCCTCGAGAAGTCGAGAGAGGACATTGGCCAGAAGAGTATTCTCTTTCAGATCATGCTAGGCTCACTGCTGTGTTTTCACCAGCAAAGATGAGATGCTATGGATCACAAAAACTATAG 1431 0.4214 MVVAAGSSVAKLNLRKGKGSSYNVMSGGDNSDGDLSIVSNNSDSECCSSSMVEVERGPSCVSFTTFNILAPIYKRIDPKNQSLRESEFRYSWLSRNESILNSLLAESSSIMCLQEFWVGNEELVHMYEEKLGDAGYHLFKLARTNNRGDGLLTAIHTKYLHVVNYRELFLNDFGDRVAQLLHVQSIAPVSQNQMGSLHQEFLIVNTHLLFPHDSSLCIVRLHQVHQILQHVELFQKENRLKPMPIILCGDWNGSKKGHVYKFLRSQGFVSSYDCYADSHKQWVSHRNHRGNICGVDFIWLCNPNQPRKPLKTSWAEAVFSILKYQLRKASLSEDSAFTFLKGDNCADAVTYLSFHEALRQVKLVDVPNGLCIQQFQDLWNQADVDGNGVIDLEEFKQKIWNSTCPEPVLESFNGCMEDVNATNEHETIGFKVKTAMLFPREVERGHWPEEYSLSDHARLTAVFSPAKMRCYGSQKL* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0295 476 SUPERFAMILY DNase I-like 44 273 IPR036691 -
Amo12g0295 476 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 33 471 - -
Amo12g0295 476 Pfam Endonuclease/Exonuclease/phosphatase family 98 269 IPR005135 GO:0003824
Amo12g0295 476 ProSiteProfiles EF-hand calcium-binding domain profile. 370 405 IPR002048 GO:0005509
Amo12g0295 476 SUPERFAMILY EF-hand 351 401 IPR011992 -
Amo12g0295 476 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 33 471 - -
Amo12g0295 476 ProSitePatterns EF-hand calcium-binding domain. 383 395 IPR018247 -
Amo12g0295 476 Gene3D Endonuclease/exonuclease/phosphatase 43 470 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0295 Amo-Chr12 4943798 4948569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0295 126 470 EF-hand Containing Proteins AT1G02270 61.605 1.09e-155 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0295 - - gmx:100777138 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0295 12 4943798 4948569 Amo12g0295 12 4943798 4948569 ECH