Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0180 ATGGCATCTTCCATCATCTCACAGTACCATAGCCTTAAAGATAATCATAATCCATTATCTTTACATCATCTTGATCCTTATTATGTTCATAACAACACACAAATCCTTAGAAGCCATTCATCATCCACTTCAATTTCTGTTGGAGTGTTAGATAAGAAGCCTCATTTTTCTGATACCCTATTTGCCCCACCAAACCTTTCTCCATGCTTTCACTTTTTGGATGAATTGTGTGAGATAAGGGATTTGAATTCTGTGAGGGAACTACATGCACAGATRCTGAAAATGCCAAGAAACAAAGGTGGTAGTAGTASCTTGGCCACAATAGATGAAACCGTTATGAGATACTATTTGGARTTTGATGATTTTGTGTCTGCAATAAAGGTTTTCTTTGTTGGTTTWWCGAGGAATTATCTTCTATGGAACTCTTTCTTGGAGAAATTTGGAAGTTTTGGAGGTGACCCTTATGAGATTCTTGMTGTATTTGGTGAACTGCATAAGAAAGGTGTTGAATTTGATAGCATAGCTTTCACTGTTGTTCTGAAAATTTGCTTGGTTTTGATGGATTTGAAGGTTGGATTAGAGATTCATGCTTGTTTGATAAAGAGAGGATTCCATTTTGATGTGCATTTGTRTTGTGCATTGATCAATTTGTATGAGAAGTGCTGGGGTGTAGATAGAGCATACCAAGTGTTTGATGAAGCGCCCCAGAAAGAAGATTTCTTGTGGAACACGATAATTATGGCGAGCCTGAGGAGTGAGAAGTGGTTTGATGGCTTAGAATTGTTTCGCGGCATGCAGTTATCTTCGGCTAAAGCCACCGGTGGCACCATYGTCAAGGTGCTGCAAGCATGTGGAAAATTGAGAGCTCTCAACGAAGGGAAACAAATTCATGGATATGTTTTAAGGCGGGGATTAGTGTCGAACATGTCCATTAGCAATTCCATAATTAGCATGTACTCTAAGAAYCATAGTCTTAAAATGGCTAGAACATTTTTTGATTCAATGGAGGATTATAACTTGTCATCTTGGAACTCAATTATTTCATGTTATGCTGGTTATGGCAACTTGGAAGATGCCCTGGATATCTTCCAAGAAATGGAAGCTTCCGGCATTAAACCAGACATTATAACTTGGAATTCTCTTATGTCRGGTCTTCTTCTTCAGGGTTCATACAAAGCTGTTCTGGCCAATTTCCRGAGCCTGCAAGTCGAAGGCTTGAAGCCGGATTCGGGCTCGGTAACTAGTGCACTACAAGCAATTATTGAATTGGGTATCTTCAACTTAGGGAAAGAAATTCATGGTTAYMTATTGAGAAACAAGCTTGATCATGATGTTTATGTTTGCACTTCATTGATGGATATGTATATCAAGAATGATGAGTTACATAAAGCTCAAAAAGTGTTCCATCGCACAAAGAACAAAAACATYTGTGCTTGGAATTCATTGATATCAGGGTACTCCTTCAAGGGMCAGTTTAGTGATGCTGAAGAACTATTGAACCAGATGGAGAAAGAARGTATARAACCTGATATAGTTACATGGAACAGTTTGATTTCTGGTTATTCAATGCATGGCCGAAGCGAGGAAGCTATGGATGTGATTAATAGGATGAAGAGTTCAGGATTTTCACCTAATGTGGTTTCATGGACTGCAATGGTATCCGGCAGTTCTCGGAACAAAARTCATATGGATTCCATCCGGTTTTTCGGCCAAATGCAAGCACAAAATGTAAGGCCTAATTCTACTACTATTTGCAGCTTACTTCGAGCTTGCTCCGGCCAGTCGCTTCTAAAGAAAGGCGAAGAGATACACTGCCTCTGCATAAGACATGGATTTATAGAGGATATGTACATAGCCACAGCACTCATTGACATGTATAGCAAGGCAGGGAAGTTGAAAGTAGCATGCGAAATTTTCGGAAGAATAGAGGGGAAAACACTTCCTTGTTGGAACTGTATGATGATGGGATATGCTATTCACGGCCACGGTGAAGAAGTAATTTYTCTTTTTAACAAAATGCTCAAAACTGGTATCATCCCTGATTCTATTACCTTCACAGCTCTTCTATCCGGCTGCAAGAATTCAGGTCGAATCAATGATGGATGGAAGTACTTTGACAGTATGAGTACAGATTACAACATTGTTCCAACAATTGAGCACTATTCTTGCATGGTGGACCTTCTTGGAAAATCTGGTTTTCTTGAYGAAGCTCTGCATTTCATCCAAACTATGCCAGTAAAKCCGGATGCTAGTATCTGGGGAGCTCTTCTTGCWTCCTGCCGAAWTCACAAAAACATTATGCTAGCCGAGACTGCGTYGAGGAATCTGTTCAAGCTAGAGCCTTATAATTCTGCCAACTATGTTATAATGATGAAYATATATTCGGCTTTAGGCAAATGGGACGACGCGCAGCGCCTTAGAGACACAATGGTTGCTGCAGGGTTGAAAAGCCCTGGTGTTTGGAGCTGGATACAGGTAAATCAAACTACTCATGTGTTCTCTACAGAAGGGAAATCACATCAAGAAGAAGGCGAAATATATTTCGAATTATATCAGTTAGTTTCTAAGGTGAAGAAGCTAGGATATGTGCCTGATATAAGTTGTGTGTATCAAAATATTGACAACAATGAAAAGGAGAAGGTTCTTCTSAGTCACACTGAGAAGCTAGCTATCACATATGGACTCATGAAAACAAAAGGTGGATCACCTATCAGGGTAGTTAAGAACACGAGAGTTTGTCAGGATTGTCACACATTAGCCAAGTACATTTCTTCGGCCGAAAATCGYGAGATTTTGCTCCGAGATGGCGGCCGTTTTCACCATTTTGTGAATGGAAAATGCTCCTGTAATGGTTGTTGGTAA 2862 0.3945 MASSIISQYHSLKDNHNPLSLHHLDPYYVHNNTQILRSHSSSTSISVGVLDKKPHFSDTLFAPPNLSPCFHFLDELCEIRDLNSVRELHAQXLKMPRNKGGSSXLATIDETVMRYYLEFDDFVSAIKVFFVGXXRNYLLWNSFLEKFGSFGGDPYEILXVFGELHKKGVEFDSIAFTVVLKICLVLMDLKVGLEIHACLIKRGFHFDVHLXCALINLYEKCWGVDRAYQVFDEAPQKEDFLWNTIIMASLRSEKWFDGLELFRGMQLSSAKATGGTIVKVLQACGKLRALNEGKQIHGYVLRRGLVSNMSISNSIISMYSKNHSLKMARTFFDSMEDYNLSSWNSIISCYAGYGNLEDALDIFQEMEASGIKPDIITWNSLMSGLLLQGSYKAVLANFXSLQVEGLKPDSGSVTSALQAIIELGIFNLGKEIHGYXLRNKLDHDVYVCTSLMDMYIKNDELHKAQKVFHRTKNKNICAWNSLISGYSFKGQFSDAEELLNQMEKEXIXPDIVTWNSLISGYSMHGRSEEAMDVINRMKSSGFSPNVVSWTAMVSGSSRNKXHMDSIRFFGQMQAQNVRPNSTTICSLLRACSGQSLLKKGEEIHCLCIRHGFIEDMYIATALIDMYSKAGKLKVACEIFGRIEGKTLPCWNCMMMGYAIHGHGEEVIXLFNKMLKTGIIPDSITFTALLSGCKNSGRINDGWKYFDSMSTDYNIVPTIEHYSCMVDLLGKSGFLDEALHFIQTMPVXPDASIWGALLASCRXHKNIMLAETAXRNLFKLEPYNSANYVIMMNIYSALGKWDDAQRLRDTMVAAGLKSPGVWSWIQVNQTTHVFSTEGKSHQEEGEIYFELYQLVSKVKKLGYVPDISCVYQNIDNNEKEKVLLSHTEKLAITYGLMKTKGGSPIRVVKNTRVCQDCHTLAKYISSAENREILLRDGGRFHHFVNGKCSCNGCW* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0180 953 Gene3D Tetratricopeptide repeat domain 697 838 IPR011990 GO:0005515
Amo12g0180 953 Gene3D Tetratricopeptide repeat domain 309 427 IPR011990 GO:0005515
Amo12g0180 953 Gene3D Tetratricopeptide repeat domain 432 522 IPR011990 GO:0005515
Amo12g0180 953 Gene3D Tetratricopeptide repeat domain 606 696 IPR011990 GO:0005515
Amo12g0180 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 711 IPR002885 -
Amo12g0180 953 Pfam E motif 763 825 IPR046848 -
Amo12g0180 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
Amo12g0180 953 PANTHER OS05G0586900 PROTEIN 152 237 - -
Amo12g0180 953 Pfam PPR repeat 620 644 IPR002885 -
Amo12g0180 953 Pfam PPR repeat 313 339 IPR002885 -
Amo12g0180 953 Pfam PPR repeat 241 266 IPR002885 -
Amo12g0180 953 Pfam PPR repeat 720 744 IPR002885 -
Amo12g0180 953 Pfam PPR repeat 447 476 IPR002885 -
Amo12g0180 953 Pfam PPR repeat 478 505 IPR002885 -
Amo12g0180 953 Gene3D Tetratricopeptide repeat domain 534 605 IPR011990 GO:0005515
Amo12g0180 953 TIGRFAM PPR: pentatricopeptide repeat domain 342 375 IPR002885 -
Amo12g0180 953 TIGRFAM PPR: pentatricopeptide repeat domain 478 511 IPR002885 -
Amo12g0180 953 TIGRFAM PPR: pentatricopeptide repeat domain 683 717 IPR002885 -
Amo12g0180 953 TIGRFAM PPR: pentatricopeptide repeat domain 512 546 IPR002885 -
Amo12g0180 953 TIGRFAM PPR: pentatricopeptide repeat domain 649 682 IPR002885 -
Amo12g0180 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Amo12g0180 953 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 152 237 - -
Amo12g0180 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 545 579 IPR002885 -
Amo12g0180 953 Pfam DYW family of nucleic acid deaminases 861 953 IPR032867 GO:0008270
Amo12g0180 953 Pfam PPR repeat family 509 555 IPR002885 -
Amo12g0180 953 Pfam PPR repeat family 649 692 IPR002885 -
Amo12g0180 953 Pfam PPR repeat family 340 385 IPR002885 -
Amo12g0180 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 783 817 IPR002885 -
Amo12g0180 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Amo12g0180 953 PANTHER OS05G0586900 PROTEIN 236 941 - -
Amo12g0180 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 680 IPR002885 -
Amo12g0180 953 Gene3D Tetratricopeptide repeat domain 116 291 IPR011990 GO:0005515
Amo12g0180 953 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 236 941 - -
Amo12g0180 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0180 Amo-Chr12 2709183 2712110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0180 151 953 Glycoside Hydrolase AT3G49170 30.481 5.67e-133 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0180 - - adu:107463433 1813.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0180 12 2709183 2712110 Amo12g0180 12 2709183 2712110 ECH