Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0166 ATGGAGAATCTGATACAGCTTGTGAACAAGATACAGAGAGCATGCACCGCCCTCGGCGACCACGGCGAGGACGGCAAAGAAGGTGCCGTTCCCACTCTCTGGGACGCCCTTCCCTCTATCGCAGTCGTCGGCGGCCAGAGCTCTGGAAAATCTTCGGTGTTGGAGAGTATTGTCGGAAAGGACTTTTTGCCTCGTGGATCTGGTATCGTAACTCGGCGTCCTCTTGTTTTGCAACTTCATAAGATTGACGAAGGGAGGGAGTATGCAGAGTTTATGCATCTTCCAAGGAAGAAGCAAGAGATCTCTGATGAGACTGACAGAGAAACTGGTCGAACCAAGGGCATTTCTTCTGTTCCTATCCATCTTAGTATCTACTCCCCTCATGTTGTTAATCTAACACTGGTTGATCTTCCTGGACTTACAAAAGTCGCCGTTGATGGTCAACCAGATAGCATTGTGCAAGACATTGAAAATATGATTCGGGCTTTTATCGAAAAGCCAAATTGCATCATTTTGGCAATATCTCCGGCTAATCAAGATCTTGCTACCTCAGATGCAATTAAGATTTCCCGTGAAGTAGACCCTAAAGGGGAAAGGACATTTGGAGTTTTGACAAAGATTGATCTTATGGACAAGGGTACGGATGCCGTGGATATCCTTGAAGGGAAAGCATATAAGCTAAATTTCCCTTGGATTGGTGTTGTCAACCGCTCCCAAGCAGATATCAACAAAAATGTTGATATGATTGCTGCTCGACGTAGAGAGCAAGAGTATTTTGAAACTACTCCAGAATATAGACATCTCGCAAGCAGAATGGGCTCAGTGCATCTAGGAAAGGTGCTATCTAAGCATTTGGAAACTGTCATAAAGTCTCGGATCCCAGGCCTTCAGTCACTAATTAGTAAGACAATCATGGATTTGGAAATGGAACTAAATCGCATTGGGAAACCTATTGCTGCAGATACTGGAGGGAAGTTGTACACGGTAATGGAAATCTGTCGAAGTTTTGATCAGATATTTAAAGATCATCTTGATGGAATACGCCCTGGTGGTGATAAAATTTACCAAGTATTTGACAATCAGTTTCCAGCAGCTCTTAAAAGGCTACACTTTGACAAACATCTTTCAATGGACACGGTGCGAAAACTAATAACTGAAGCAGATGGATATCAACCTCACCTCATCGCTCCTGAGCAAGGATACCGCCGTCTTATTGAATCTTGTGTAGTATCTATTAGGGGCCCTGCTGAAGCAGCTGTTGATATGGAACTAAAGCAATATCCCACCCTTAAAGTAGAACTTGGAGCTGCAGCCAATGAATCATTGGAGAGGATGAGAGAAGAAAGTAAGAGAGCAACTCTGCAATTGGTAGACATGGAATGTGCTTATTTAACTATCGACTTTTTCCGCAAACTTCCTCAAGATGCCGAGAAGGGTGGAAATCCAACTCACTCGCTTTTCGACAGATACAGCGATGCTTATCTTCGTCGAATTGCAACCACTGTATTGTCCTACGTGAACATGGTATGTGCAAGCCTCAGGAATACTATTCCCAAGTCTGTAGTTTATTGTCAAGTACGCGAGGCTAAACGCAGCTTACTCGATCATTTCTTCACAGAGTTGGGGAAGAAGGATGGAAAACAACTATCTGCGTTGCTGAATGAGGATCCGGCAGTGATGCAGCGCAGAACCTCGCTCGCAAGAAGGCTAGAGCTATACAGAAATGCCCAAGCAGAAATTGAAGCTGTTGCATGGGATAAGTAG 1764 0.4427 MENLIQLVNKIQRACTALGDHGEDGKEGAVPTLWDALPSIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKIDEGREYAEFMHLPRKKQEISDETDRETGRTKGISSVPIHLSIYSPHVVNLTLVDLPGLTKVAVDGQPDSIVQDIENMIRAFIEKPNCIILAISPANQDLATSDAIKISREVDPKGERTFGVLTKIDLMDKGTDAVDILEGKAYKLNFPWIGVVNRSQADINKNVDMIAARRREQEYFETTPEYRHLASRMGSVHLGKVLSKHLETVIKSRIPGLQSLISKTIMDLEMELNRIGKPIAADTGGKLYTVMEICRSFDQIFKDHLDGIRPGGDKIYQVFDNQFPAALKRLHFDKHLSMDTVRKLITEADGYQPHLIAPEQGYRRLIESCVVSIRGPAEAAVDMELKQYPTLKVELGAAANESLERMREESKRATLQLVDMECAYLTIDFFRKLPQDAEKGGNPTHSLFDRYSDAYLRRIATTVLSYVNMVCASLRNTIPKSVVYCQVREAKRSLLDHFFTELGKKDGKQLSALLNEDPAVMQRRTSLARRLELYRNAQAEIEAVAWDK* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0166 587 CDD DLP_1 37 294 IPR001401 GO:0003924|GO:0005525
Amo12g0166 587 Pfam Dynamin family 40 207 IPR045063 -
Amo12g0166 587 SMART dynamin_3 1 245 IPR001401 GO:0003924|GO:0005525
Amo12g0166 587 Coils Coil 442 462 - -
Amo12g0166 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 302 IPR027417 -
Amo12g0166 587 Pfam Dynamin central region 215 465 IPR000375 -
Amo12g0166 587 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 34 294 IPR030381 GO:0005525
Amo12g0166 587 Pfam Dynamin GTPase effector domain 492 583 IPR003130 GO:0003924|GO:0005525
Amo12g0166 587 Gene3D - 1 303 IPR027417 -
Amo12g0166 587 PANTHER DYNAMIN-RELATED PROTEIN 1B 2 586 - -
Amo12g0166 587 PANTHER DYNAMIN 2 586 IPR022812 -
Amo12g0166 587 PRINTS Dynamin signature 37 55 IPR022812 -
Amo12g0166 587 PRINTS Dynamin signature 62 79 IPR022812 -
Amo12g0166 587 PRINTS Dynamin signature 126 143 IPR022812 -
Amo12g0166 587 PRINTS Dynamin signature 218 237 IPR022812 -
Amo12g0166 587 PRINTS Dynamin signature 176 194 IPR022812 -
Amo12g0166 587 PRINTS Dynamin signature 195 211 IPR022812 -
Amo12g0166 587 Gene3D Dynamin, middle domain 320 553 - -
Amo12g0166 587 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 63 72 IPR019762 -
Amo12g0166 587 SMART GED_2 490 583 IPR003130 GO:0003924|GO:0005525
Amo12g0166 587 ProSiteProfiles GED domain profile. 495 587 IPR020850 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0166 Amo-Chr12 2483743 2488556 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0166 - - gmx:100793097 1046.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0166 12 2483743 2488556 Amo12g0166 12 2483743 2488556 ECH