Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0119 ATGCCAGGACTATTCGCCGCTAGAACCCCATCAAAAACGCAGTCGTTTCGCGATTTCCTCATTGAACCGCCGGAAAACGAACCCTCCAGCGAGCTGAACCCTTCTCCGCCGCCGACAGCGAAACGAACCACCATGAGAACGCCGGATAAACTCGCCGTCGACGACAACGATACCTCCCTTGACAACCCAGACATGGGCCCGTTCCTTCTGAAGATGGCCCGAGACACTATTCATTCGGGTCAGGACCCGAAGAAAGCCCTAGAATACGCAATTCGGGCCTCCGAGGATTTCGAGCGGGTGTCGGGTCCAAGTCCGGATCTTGCCACGTGTCTCCACGTGGTTGCTGCAATATTGAGCGGGCTGGGGCGGTTAGAGGAAGCGGTCGAGACTCTGGAGCGGTCAATTCTGGTGTCGGATAGTGCAGAAAACGGGTCGGGTCATGCAATGGTGAAGTTTTCAGGGTTGATGCAGTTAGGAGATACTTATTCAATGATTGGGCAGTTGGATAGGTCCATTGAGTGTTATGAATCGGGTCTGAAAATCCAAGTTGAGGCTTTGGGTAGATCTGACCCGAGAGTTGCTGAGACTTGCAGATACTTAGCTGAGGCGCATGTTCAAGCCATGCAATTTGATGAGGCTGAGAAATTCTGCAAGAAGACCCTTGAGATTCATAGGGAGCATTGCTCGCCAGCTTCTCTTACAGAAGCAGCCGATAGGCGTCTTATGGCCCTCATATGCGAGGCGAAGGGAGAATACGAGCCGGCACTTGAACATCTTGTCCTTGCTAGTATGTCGATGATTGCCCATGGGCAGGACAATGAGGTTGCAGCGATTGACGTTAGCATTGGCGATATTTACTTGTCGCTCTGTCGTTTTGACGAGGCTATTTTCGCCTACCAAAAAGCGCTAACAGTGTTCAAAACCACCAAAGGTGAAAGTCACAGTTCCATAGCATTAGTGTACATTCGCCTTGCCGACCTCTACTACAAGACAGGAAAATTGCGGGAGTCAAAATCCTATTGTGAAAATGCGTTAAGAATATACTCCAAACCTGTACCTGGAACTACCCCAGGGGAAATTGCAAGTGGATTGAACGAAATCTCTGCCATCTATGAAGCTTTAAACGAGCCGGAGGAGGCACTGAAGCTCCTCCAGAAGGCAGTGAAGTTATTGGAGAATATCCCCGGACAATATAGGACAGTGGCAGGAATAGAATCTCAAATAGGAGTAATCTTCTACATGGTTGGGAGATACAGTGATGCATGGAAATCTTTTGCGAGTGCCATTGCAAAGCTTAGAGCAAGCGGAGAGAGGAAATCGGCGTTCTTCGGATTTGTGTTGAACCAGATGGGCCTAGCATGTGTGCAACTGTATAAAATTGCGGAAGCTGCCACACATTTCGAAGAAGCAAGAGAGATATTGGAGCAGGAGTGTGGAACATACCATTTGGACACTCTTGGAGTTTATAGCAATCTTGCAGCAACTTATGATGCCATGGGGAGAGTTGAGGATGCCATTGAGATATTGGAGTACATACTTAAGATGAGAGAAGAAAAACTTGGAACTGCAAATCCAGATGTTGATGATGAAAGGAAAAGACTGTTTGAGCTTTTGAAAGAGGCAGGAAGAGTTAGAAACAAGAAGGCAAAATCACTTGAAAATCTTATAGAATCCAAGTCTTTCAAGATGAAGAATGAAGGGAAGAAGAAAAGGGTTGCATTTGGTTTGAGAACTTGA 1737 0.4744 MPGLFAARTPSKTQSFRDFLIEPPENEPSSELNPSPPPTAKRTTMRTPDKLAVDDNDTSLDNPDMGPFLLKMARDTIHSGQDPKKALEYAIRASEDFERVSGPSPDLATCLHVVAAILSGLGRLEEAVETLERSILVSDSAENGSGHAMVKFSGLMQLGDTYSMIGQLDRSIECYESGLKIQVEALGRSDPRVAETCRYLAEAHVQAMQFDEAEKFCKKTLEIHREHCSPASLTEAADRRLMALICEAKGEYEPALEHLVLASMSMIAHGQDNEVAAIDVSIGDIYLSLCRFDEAIFAYQKALTVFKTTKGESHSSIALVYIRLADLYYKTGKLRESKSYCENALRIYSKPVPGTTPGEIASGLNEISAIYEALNEPEEALKLLQKAVKLLENIPGQYRTVAGIESQIGVIFYMVGRYSDAWKSFASAIAKLRASGERKSAFFGFVLNQMGLACVQLYKIAEAATHFEEAREILEQECGTYHLDTLGVYSNLAATYDAMGRVEDAIEILEYILKMREEKLGTANPDVDDERKRLFELLKEAGRVRNKKAKSLENLIESKSFKMKNEGKKKRVAFGLRT* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0119 578 Gene3D Tetratricopeptide repeat domain 75 151 IPR011990 GO:0005515
Amo12g0119 578 MobiDBLite consensus disorder prediction 21 63 - -
Amo12g0119 578 PANTHER KINESIN LIGHT CHAIN-LIKE PROTEIN 24 577 - -
Amo12g0119 578 Pfam MalT-like TPR region 115 261 IPR041617 -
Amo12g0119 578 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 24 577 - -
Amo12g0119 578 Gene3D Tetratricopeptide repeat domain 262 438 IPR011990 GO:0005515
Amo12g0119 578 SUPERFAMILY TPR-like 89 522 IPR011990 GO:0005515
Amo12g0119 578 SMART tpr_5 361 394 IPR019734 GO:0005515
Amo12g0119 578 SMART tpr_5 402 435 IPR019734 GO:0005515
Amo12g0119 578 SMART tpr_5 152 185 IPR019734 GO:0005515
Amo12g0119 578 SMART tpr_5 194 227 IPR019734 GO:0005515
Amo12g0119 578 SMART tpr_5 486 519 IPR019734 GO:0005515
Amo12g0119 578 SMART tpr_5 318 351 IPR019734 GO:0005515
Amo12g0119 578 SMART tpr_5 276 309 IPR019734 GO:0005515
Amo12g0119 578 SMART tpr_5 108 141 IPR019734 GO:0005515
Amo12g0119 578 SMART tpr_5 444 477 IPR019734 GO:0005515
Amo12g0119 578 ProSiteProfiles TPR repeat profile. 361 394 IPR019734 GO:0005515
Amo12g0119 578 ProSiteProfiles TPR repeat profile. 276 309 IPR019734 GO:0005515
Amo12g0119 578 Pfam Tetratricopeptide repeat 447 518 - -
Amo12g0119 578 Pfam Tetratricopeptide repeat 275 349 - -
Amo12g0119 578 Gene3D Tetratricopeptide repeat domain 439 573 IPR011990 GO:0005515
Amo12g0119 578 Gene3D Tetratricopeptide repeat domain 153 261 IPR011990 GO:0005515
Amo12g0119 578 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0119 Amo-Chr12 1714463 1718690 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0119 - - gmx:100794697 871.307