Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2501 TGGTTAGCTACCAGAACTTTTATAAATATTTTCGCACTACTATATATACTAAATTTTATTTTTAGAGGTCATAATACCTCGCCACCTCTGTTTTATGACTTAATCATAAGACTTTGTGTGGTAAGGTGTTACAAACAAATGAGCGTGGAAGATCTTCCTCGGAAGGAGGTGAACGTGCTGAAGGGGCACGAGGGCGCCGTACTTTCCGCAAGGTTCAACGCTGATGGCAACTACTGCCTCAGCTGTGGCAAAGACCGCACCATACGCCTCTGGAATCCCCACCGCGGCATCCACATCAAGACCTACAAATCCCACGGCCGTGAAGTCCGCGATGTCCATGTCACTTCGGACAACTCCAAGCTATGTTCGTGTGGTGGAGATCGCCAGATTTTTTATTGGGATGTAGCTACAGGCCGTGTAATTCGAAAGTTCCGTGGTCATGACGGTGAGGTCAATGCTGTGAAATTCAATGAGTATTCCTCTGTGGTAGTATCAGCTGGATATGATCAATCCTTGCGTTCTTGGGACTGCAGATCCCACAGCACCGAGCCTATGCAGATTATTGACACATTTTCAGATAGTGTCATGTTTGTTTGCTTAACAAATACTGAAATCATTGGAGGAAGTGACGATGGAACTGTTCGAACCTTTGACATTCGCATTGGCAGGCATGTAGCGGCATATTTCAAAATGAAAGAGAAACACTCCCGGTACACACACGTATTGTCATCTGCTTCAGAAACATCTGATAACTTGGGGCAACCGGTTAACTGCATATCCATGTCAAATGATGGTAACTGCATTCTAGCTGGTTGTCTCGACTCTACTCTGCGGCTTTTGGACCGATCTACAGGGGAGTCATTGCAAGAATATAAAGGGCACACTAATAAGTCATTTAAATTGGATTGCTGCCTTACCAATACGGATGCTCATGTAACTGCTGGCTCTGAGGATGGCTACATCTATTTTTGGGATCTTGTAGATGCATCGGTCGTGTCAAGATTCAGGGCTCATAACTCAGTGGTAACAAGCGTAAGTTATCACCCAAAGGAGAATTGCATGGTAACTGCTTCTGTGGATGGCACCATTCGAGTGTGGAAGACATAG 1107 0.4508 WLATRTFINIFALLYILNFIFRGHNTSPPLFYDLIIRLCVVRCYKQMSVEDLPRKEVNVLKGHEGAVLSARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTSDNSKLCSCGGDRQIFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSAGYDQSLRSWDCRSHSTEPMQIIDTFSDSVMFVCLTNTEIIGGSDDGTVRTFDIRIGRHVAAYFKMKEKHSRYTHVLSSASETSDNLGQPVNCISMSNDGNCILAGCLDSTLRLLDRSTGESLQEYKGHTNKSFKLDCCLTNTDAHVTAGSEDGYIYFWDLVDASVVSRFRAHNSVVTSVSYHPKENCMVTASVDGTIRVWKT* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2501 368 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Amo11g2501 368 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 143 IPR001680 GO:0005515
Amo11g2501 368 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 176 - -
Amo11g2501 368 SUPERFAMILY WD40 repeat-like 52 367 IPR036322 GO:0005515
Amo11g2501 368 CDD WD40 56 367 - -
Amo11g2501 368 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 335 368 - -
Amo11g2501 368 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 92 - -
Amo11g2501 368 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Amo11g2501 368 PANTHER WD40 REPEAT PROTEIN 51 367 - -
Amo11g2501 368 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 368 IPR001680 GO:0005515
Amo11g2501 368 Pfam WD domain, G-beta repeat 139 176 IPR001680 GO:0005515
Amo11g2501 368 Pfam WD domain, G-beta repeat 55 92 IPR001680 GO:0005515
Amo11g2501 368 Pfam WD domain, G-beta repeat 253 279 IPR001680 GO:0005515
Amo11g2501 368 Pfam WD domain, G-beta repeat 99 134 IPR001680 GO:0005515
Amo11g2501 368 Pfam WD domain, G-beta repeat 333 367 IPR001680 GO:0005515
Amo11g2501 368 Pfam WD domain, G-beta repeat 286 325 IPR001680 GO:0005515
Amo11g2501 368 Gene3D - 45 368 IPR015943 GO:0005515
Amo11g2501 368 SMART WD40_4 328 367 IPR001680 GO:0005515
Amo11g2501 368 SMART WD40_4 235 281 IPR001680 GO:0005515
Amo11g2501 368 SMART WD40_4 95 134 IPR001680 GO:0005515
Amo11g2501 368 SMART WD40_4 284 325 IPR001680 GO:0005515
Amo11g2501 368 SMART WD40_4 53 92 IPR001680 GO:0005515
Amo11g2501 368 SMART WD40_4 181 218 IPR001680 GO:0005515
Amo11g2501 368 SMART WD40_4 137 176 IPR001680 GO:0005515
Amo11g2501 368 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2501 Amo-Chr11 131065368 131070035 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2501 141 366 Miscellaneous Gene Families AT5G08390 24.359 1.37e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2501 K13124 - gmx:100795039 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2501 11 131065368 131070035 Amo11g2501 11 131065368 131070035 ECH