Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2196 ATGAGAAGGCGACCTGGAATCGGAGGGTTGCAGACAGCTGCAGCAGCAAGGGATCAGTATCGGTTGCTTGGTGAGAATGTCGCAAAGATCAGAACCGATTTGATGAAGGAACAGCTTGCCACTTTTCGATCCCAGCTTGAAGATTTTGCTCGCAAGCACAAGAATGACATCCGCAAGAACCCTGCGTTCAGATCACAGTTCCACGAGATGTGTGCTAAAGTTGGAGTAGATCCATTGGCCTCAAACAAAGGTTTCTGGGCAGAGCTTTTAGGAATTGGTGACTTCTATTATGAACTTGGAGTTCAAATAGTCGATATTTGCTTGGCAACTAGACCACACAATGGAGGACTGATCAACCTTCAGGAACTCTGCCATCTCCTTCGTCAGAGACGGAAAAGTGATAGGGGAGTTGTTTCTGAGGATGATTGCCTGCGTGCTATCAGCAAACTAAAGGTGCTGGGTAGTGGTTTTGAAGTTTTTTCAGTTGGTAAAAAAAAGCTTGTCCGTTCAGTTCCAACTGAGTTGAACAAAGACCACAATGAAATTCTAGAGCTTGCCCAGGCTCAAGGATATGTGACTGTTGAAGAAGTAGAGAGGCGGCTATCTTGGACTTCGGGCCGTGCTATTGATGCACTTGATACATTACTTGATGAAGGACTTGCGATGATCGATGATGGCCATCGAGATGGTAAACGGCGTTACTGGTTTCCCTGTGTATCTCCCATCTCATCTTCAATAGGAGTTGATTCCTAA 753 0.4568 MRRRPGIGGLQTAAAARDQYRLLGENVAKIRTDLMKEQLATFRSQLEDFARKHKNDIRKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPHNGGLINLQELCHLLRQRRKSDRGVVSEDDCLRAISKLKVLGSGFEVFSVGKKKLVRSVPTELNKDHNEILELAQAQGYVTVEEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHRDGKRRYWFPCVSPISSSIGVDS* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2196 250 SUPERFAMILY "Winged helix" DNA-binding domain 24 174 IPR036390 -
Amo11g2196 250 Pfam EAP30/Vps36 family 6 225 IPR040608 -
Amo11g2196 250 PANTHER EAP30 SUBUNIT OF ELL COMPLEX 1 241 IPR016689 GO:0000814|GO:0071985
Amo11g2196 250 Gene3D - 24 85 - -
Amo11g2196 250 Gene3D - 91 171 IPR036388 -
Amo11g2196 250 Gene3D - 172 248 IPR036388 -
Amo11g2196 250 PIRSF ESCRT2_Vps22 1 245 IPR016689 GO:0000814|GO:0071985
Amo11g2196 250 SUPERFAMILY "Winged helix" DNA-binding domain 175 238 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2196 Amo-Chr11 120836159 120840144 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2196 K12188 - gmx:100781799 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2196 11 120836159 120840144 Amo11g2196 11 120836159 120840144 ECH