Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2027 ATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAATTGATGATGAGTGATTATACAGTGGAGATGATAAATGATGGGCTAAGTGAATTCAATGTGGAGTTTCATGGCCCCAAAGAAAGCCTCTATGAAGGCGGAGTCTGGAAAATTCGCGTGGAGCTGCCCGATGCATATCCATACAAATCCCCCTCTGTCGGCTTTGTTAACAAAATATTCCATCCAAATGTTGATGAGTTATCTGGCTCTGTATGTTTGGATGTCATCAATCAATCATGGAGTCCAATGTTTGATCTTCTAAATGTCTTTGAAGTATTCCTACCACAACTATTGCTTTATCCGAATGCTTCAGATCCTCTCAATGGTGATGCAGCATCATTAATGATGAAGGATAAAAAGCTGTATGACGAAAAAGTTAAAGAGTACTGTGAGCGGTATGCAAAGAAGGAACATATAAGCAAATCAAAAGCTGAAGAAGAGAGTGATGAGGATGATATCAGTGAAGAAGAATGTGGGTCAAGTGATGATGACATTCCTGGACATGCTGATCCCTAA 555 0.3964 MSSPSKRREMDVMKLMMSDYTVEMINDGLSEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSVGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDKKLYDEKVKEYCERYAKKEHISKSKAEEESDEDDISEEECGSSDDDIPGHADP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2027 184 Gene3D Ubiquitin Conjugating Enzyme 1 162 IPR016135 -
Amo11g2027 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Amo11g2027 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 184 - -
Amo11g2027 184 SMART ubc_7 4 148 - -
Amo11g2027 184 CDD UBCc 7 143 IPR000608 -
Amo11g2027 184 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Amo11g2027 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Amo11g2027 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 184 - -
Amo11g2027 184 MobiDBLite consensus disorder prediction 150 184 - -
Amo11g2027 184 SUPERFAMILY UBC-like 3 150 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2027 Amo-Chr11 110211753 110216947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2027 3 117 Miscellaneous Gene Families AT3G17000 23.577 3.22e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2027 K10576 - zju:107418449 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2027 11 110211753 110216947 Amo11g2027 11 110211753 110216947 ECH
Amo01g2561 01 90345120 90350295 Amo11g2027 11 110211753 110216947 hybridization