Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1898 GCAAATTTAAAAAGGGTGGTTAATTGGAGAAAAGGAGTGAGATTAGGCGAAGGAGTAAATGGGCCAAGTGGTTTTGGCTCTAACTCTACCGCTGAACAAGTCACTCTTCAACATCATTCTTCCTCTTGCAATCTAACAGCTCTCATCACTGCTGAAACAGCAAGGGTGTTAGCAAAGAGAGGAGTGAAAGTAGTTATTGCAGCGAGAGACTTAAAGAAAGCAAAAGATGTGATAGAGAATATTCGAAAAGAGACACCAAATGCTGAGGTTATTCTATTGGAGATTGATCTTAGCTCCTTTGCTTCTATTCAGAGATTTTGTTCCGAGTTCTTAGCTTTGGAACTCCCCCTCAATATTCTCATAAATAATGCAGGAATATTCTCTCCAAATCTTGAGTTCTCTGAAGATAAATTTGAAATGACATTTGCTACAAATTACTTAGGACATTTTTTGTTAACGAAGATGCTATTAGAGAAATTGATAGATACAGCAAAGAAGACAGGCATTGAAGGAAGAATAATAAACGTTTCCTCTGTCATCCATAGCTGGGTGAACAGAGGCTGTTTTCGCTTCAATGACATGCTCGCCGGAAAAAACTATAATGGCACACGCGCATATGCTCAGTCAAAATTGGCTAGCATTCTACATGTGAAGGAAATGGCTAGACAGCTCAAGGCACGGAATGCTAGAGTAACTATCAATGCAGTTCATCCAGGAATCTTACTCAACGTTCACAACTTCCTTGCAGATTCCATATTTTTCATCGCATCCAAATTACTCAAATCAAAATCACAGGGTGCGGCAACCACATGTTATGTTGCTCTAAGTTCCCAAGCAGAAGGAGTGAGTGGGAAATATTTCACAGATTGCAATGAATGTAACTGCTCAAGTCTTGCAAGCAATGAATTCGAAGCACGAAAGCTATGGAACAACACACATGCCTTGCTTCACAAGCGACTCCGTCAAGCAGCAACTTGA 978 0.4018 ANLKRVVNWRKGVRLGEGVNGPSGFGSNSTAEQVTLQHHSSSCNLTALITAETARVLAKRGVKVVIAARDLKKAKDVIENIRKETPNAEVILLEIDLSSFASIQRFCSEFLALELPLNILINNAGIFSPNLEFSEDKFEMTFATNYLGHFLLTKMLLEKLIDTAKKTGIEGRIINVSSVIHSWVNRGCFRFNDMLAGKNYNGTRAYAQSKLASILHVKEMARQLKARNARVTINAVHPGILLNVHNFLADSIFFIASKLLKSKSQGAATTCYVALSSQAEGVSGKYFTDCNECNCSSLASNEFEARKLWNNTHALLHKRLRQAAT* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1898 325 Pfam short chain dehydrogenase 49 180 IPR002347 -
Amo11g1898 325 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 12 321 - -
Amo11g1898 325 Coils Coil 64 84 - -
Amo11g1898 325 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Amo11g1898 325 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Amo11g1898 325 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Amo11g1898 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 51 293 IPR036291 -
Amo11g1898 325 PANTHER RETINOL DEHYDROGENASE 12 321 - -
Amo11g1898 325 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Amo11g1898 325 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Amo11g1898 325 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Amo11g1898 325 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Amo11g1898 325 Gene3D - 46 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1898 Amo-Chr11 99367556 99370710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1898 57 240 Acyl Lipid Metabolism Gene Families AT3G55290 30.159 8.25e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1898 - - gmx:100776567 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1898 11 99367556 99370710 Amo11g1898 11 99367556 99370710 ECH