Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1687 ATGAACAGTAACAATCCAGGTAGGAACGTTGCGGCACCGTCGTTTTTAGGGAATTCCGGAGCTGCCCCTCACCCCATCGCCGGTACCGCCGCCACCAACACCGCTGCTTCCACTTCGTTACCCGCGACCCACCCACAACCCCATCTTTTGTCCCAATCACAGCCTCCTCAAACCCAAGGTGGTTCTCACTTCCCCGGGCACTTTCAGCTCTCACAACCCCAAACCCAGTTACTTGCACAATCACAGTTTTCACAACCCCATTCCCATGTTCAATCCATCCCTCAACACCAGCAGCAGCCACCGCCGCGCCAGCCGCAGGCTCATCCTGCTAGCCAATCTCATGGTTCAAGTGGTAGTAGTGCGGCGGCAGCGGCAACTCCTGCTTCAACTGCCAAGCGCTCCGGGCAGAGGCCGCCTACTAGGCCGGCCGGTTCTTCAAATACTAACCAGTCTTCGGCTTTTAAGACCATGGAATTGACGCCGGCTCCTCTAAGGAGGAAGAGGAGCTTGCCAGAGAAGGATAAGAGGATTCCAGATAAGGTGGCCGCAGTTCTGCCTGAGTCTGCTGTTTATACTCAATTGCTTGAGCTTGAGGGACAGGTTGATGCTGCTTTGTCTAGGAAGAAGATTGATATACAGGAGGCTGTGAGAAGCCCCAGATGTGTTCAGAAGACTCTTCGTGTTTATGTGTATAATACCTTTTCGAATCAGAATAGAATCGATACTGAGAAGAAAATGGCAGAGGAGCCTTCTTGGTCACTTAGGATTACTGGGAGGATATTGGAAGATGGAAGAGATCCTGTGTTGGCTGGAGTCTCGCAGGGGTTGAACCCTTCATATCCCAAGTTTTCGGCTTTCTTCAAGAAAATTACCATATACTTGGACCAGGGGTTCTATCCGGATAATCATCTTATAATATGGGATCCTGCTCGTTCACCTGCCCAGCAGGACGGTTTTGAGGTTAAGAGGAAAGGAGACAAGGAATTCACAGTGGTGATGAGACTAGCAATGAATTATATACCTGAAAAGTTTGTGGTTTCAACAGCACTGTCCAAAGTTTTAGGGATTGAGTTTGATACTCGCCCCAGAATAATAGCTGCTCTATGGCAATATGTGAAGTCCAGAAAACTACAAAGCCCAAATGACCCTTCATTCTTCATGTGTGATCCTTCTCTCCAAAGGGTGTTTGGGGAAGAGAAAATAAAATTCTCCACAATTTTACAGAAGATATCACAGCAGTTATCACAACCACAGCCTATACACGTGGAGCATAAAATCAAGCTTTCTGGAAATTGTCTGGTTGGAACTACATGTTATGATGTTCTGGTTGATGTGCCTCTTCCACTGGAGAAGGATATGTCTGCATACTTGGCAAGCATCGAGAGGCACAAAGAGATTGATGCGCTTGATGAAGTGATTTGTAGTTCTATGAAGAAGATCCATGAGCATCGCAGAAGACGGGCCTTCTTTCTGGGATTTAGCCAGTCTCCAGCAGAGTTTATTAATGCTTTGATTGCATCACAGAGCAAGGATCTAAAGCTTATTGCTGGAGATGCCAGCCAAGATGAGGAAAAGGAAAGACGATCTGAATTCTACAAACAACCATGGGCTGAGGATGCTGTCATTCGCTACCTGAACCGGAAAAGTGCTCGAAGTGATATTCCTGGAAGCACCTAA 1677 0.4753 MNSNNPGRNVAAPSFLGNSGAAPHPIAGTAATNTAASTSLPATHPQPHLLSQSQPPQTQGGSHFPGHFQLSQPQTQLLAQSQFSQPHSHVQSIPQHQQQPPPRQPQAHPASQSHGSSGSSAAAAATPASTAKRSGQRPPTRPAGSSNTNQSSAFKTMELTPAPLRRKRSLPEKDKRIPDKVAAVLPESAVYTQLLELEGQVDAALSRKKIDIQEAVRSPRCVQKTLRVYVYNTFSNQNRIDTEKKMAEEPSWSLRITGRILEDGRDPVLAGVSQGLNPSYPKFSAFFKKITIYLDQGFYPDNHLIIWDPARSPAQQDGFEVKRKGDKEFTVVMRLAMNYIPEKFVVSTALSKVLGIEFDTRPRIIAALWQYVKSRKLQSPNDPSFFMCDPSLQRVFGEEKIKFSTILQKISQQLSQPQPIHVEHKIKLSGNCLVGTTCYDVLVDVPLPLEKDMSAYLASIERHKEIDALDEVICSSMKKIHEHRRRRAFFLGFSQSPAEFINALIASQSKDLKLIAGDASQDEEKERRSEFYKQPWAEDAVIRYLNRKSARSDIPGST* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1687 558 CDD SWIB_like 346 414 - -
Amo11g1687 558 MobiDBLite consensus disorder prediction 108 157 - -
Amo11g1687 558 MobiDBLite consensus disorder prediction 161 175 - -
Amo11g1687 558 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 114 555 - -
Amo11g1687 558 Pfam SWIB/MDM2 domain 343 412 IPR003121 -
Amo11g1687 558 SMART swib_2 340 419 IPR019835 -
Amo11g1687 558 MobiDBLite consensus disorder prediction 1 175 - -
Amo11g1687 558 Gene3D SWIB/MDM2 domain 336 422 IPR036885 -
Amo11g1687 558 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 114 555 - -
Amo11g1687 558 ProSiteProfiles SWIB/MDM2 domain profile. 339 416 IPR003121 -
Amo11g1687 558 MobiDBLite consensus disorder prediction 30 97 - -
Amo11g1687 558 SUPERFAMILY SWIB/MDM2 domain 334 424 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1687 Amo-Chr11 75243347 75247024 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Amo11g1687 SWIB 9.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1687 K11650 - zju:107418039 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1687 11 75243347 75247024 Amo11g1687 11 75243347 75247024 ECH