Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1578 ATGGAAGGTCAAGAAGGGTCTCAGCAGCCACAGCTTGTACTCGCCGACAAGCTCTTCCTTCTCCGTCAACCCGATGTCCCTGACATCGAGAAAGTTCGCTTCAAAGACGACGTTTTCTCTTTCGTCAAAGAAAACGATATGGTTCCTTTGTACGAAACCCTAGTGGCTGATTCGGTGTTGGACATGGATCGTGCCCTTTTGGATTCGATGCGTGCTAAGATTGACGATGAGCTCAAGAAGCTTGATGAAAAGATTGCTGATGCTGAGGAAAACCTAGGTGAGAGTGAAGTTAGAGAGGCTCACTTGGCAAAATCCTTGTTTTTCATCCGGATTGGTGACAAGGAGAAAGCCTTGGAACATCTCAAGCTTACAGAAAGCAAGACAGTTGCAGTTGGCCAGAAGATGGATCTGGTGTTTTATACATTGCAGCTTGGTTTCTTTGACATGGATTTTGACCTCATTGCCAAAAGCATTGACAAAGCCAAAAACTTGTTTGAAGAAGGTGGTGATTGGGAAAGGAAGAATCGGCTGAAAGTATATGAAGGCCTGTACTGCATGTCCACCCGAAATTTCAAGAAGGCTGCCAAATTGTTTCTGGATTCTATTTCGACCTTTACAACCTATGAACTTTTCCCCTACGACACTTTTATATTTTACACTGTTTTGACAAGCATTATATCGTTGGATAGAGTTTCCTTAAAACAAAAGGTAGTAGATGCTCCTGAGATCTTGACGGTCATTGGCAAAATCCAATATCTGTCAGAGTTCCTAAACTCCTTGTATGATTGTCGATACAAGTCTTTCTTCTCTGCATTTGCTGGCCTGACGGAGCAAATTAAGTTGGACCGCTATCTGCATCCACACTTCCGATACTACATGAGGGAGGTCAGAACTGTTGTTTATTCCCAATTTTTGGAATCTTACAAGAGCGTGACAATTGAAGCAATGGCAAAAGCCTTTGGAGTGACCGTGGATTTTATTGATCTGGAGCTATCTCGATTTATTGCAGCAGGGAAGCTTCATTGTAAGATTGACAAAGTTGCTGGAGTTCTTGAAACTAACCGGCCTGATGCAAAGAATGCTCTTTACCAAGCAACTATTAAGCAAGGGGACTTCCTATTGAACAGGATACAGAAGTTGTCACGCGTCATCGATCTTTAG 1161 0.4289 MEGQEGSQQPQLVLADKLFLLRQPDVPDIEKVRFKDDVFSFVKENDMVPLYETLVADSVLDMDRALLDSMRAKIDDELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEHLKLTESKTVAVGQKMDLVFYTLQLGFFDMDFDLIAKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAAKLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIQYLSEFLNSLYDCRYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1578 386 SMART PINT_4 287 370 IPR000717 -
Amo11g1578 386 Coils Coil 67 98 - -
Amo11g1578 386 Gene3D - 34 337 - -
Amo11g1578 386 PANTHER 26S PROTESOME SUBUNIT 6 3 386 IPR019585 -
Amo11g1578 386 PANTHER BNAC08G11800D PROTEIN 3 386 - -
Amo11g1578 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 287 370 - -
Amo11g1578 386 ProSiteProfiles PCI domain profile. 190 358 IPR000717 -
Amo11g1578 386 Pfam 26S proteasome subunit RPN7 63 236 IPR045135 -
Amo11g1578 386 Pfam PCI domain 254 354 IPR000717 -
Amo11g1578 386 SUPERFAMILY "Winged helix" DNA-binding domain 282 363 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1578 Amo-Chr11 66423205 66426712 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1578 K03037 - gmx:100810692 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1578 11 66423205 66426712 Amo11g1578 11 66423205 66426712 ECH