Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1544 ATGAAAGGCTACTGCACTAACACAATCATTTTCCACAGCAACTGCAATGCTCTTTCCTTCAGCATGGATGGGCAGACCATATTTTCTGGACATGTTGATGGTAATCTTCGGCTATGGGACATTCAGACCGGCAAGCTACTTAGTGAGGTTGCTGCACATTCACTTGCTGTCACATCAATATCCCTTTCTAGAAATGGAAATGTTGTATTGACCAGTGGAAGGGATAACTTGCATAATTTGTTTGATGTGCGATCATTGGAAGTTTGTGGCACTCTGAGAGCCTCAGGTAACAGAGTGGCTTCTAATTGGAGTCGCTCCTGTATTAGCCCAGATGACAATCATGTTGCTGCTGGCTCTGCTGATGGTTCTGTCTATATTTGGTCGATATCTAAAGGCGATATTGTCAGTACTCTGAAGGAACACAGTTCTTCTGTTCTGTGTTGTAGGTGGAGTGGAATGGGGAAACCCCTAGCTTCAGCTGACAAGAATGGAATTGTTTGCGTCTGGACATGA 513 0.4425 MKGYCTNTIIFHSNCNALSFSMDGQTIFSGHVDGNLRLWDIQTGKLLSEVAAHSLAVTSISLSRNGNVVLTSGRDNLHNLFDVRSLEVCGTLRASGNRVASNWSRSCISPDDNHVAAGSADGSVYIWSISKGDIVSTLKEHSSSVLCCRWSGMGKPLASADKNGIVCVWT* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1544 170 Pfam WD domain, G-beta repeat 133 169 IPR001680 GO:0005515
Amo11g1544 170 Pfam WD domain, G-beta repeat 4 40 IPR001680 GO:0005515
Amo11g1544 170 Pfam WD domain, G-beta repeat 107 128 IPR001680 GO:0005515
Amo11g1544 170 ProSitePatterns Trp-Asp (WD) repeats signature. 27 41 IPR019775 -
Amo11g1544 170 SUPERFAMILY WD40 repeat-like 3 169 IPR036322 GO:0005515
Amo11g1544 170 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 170 - -
Amo11g1544 170 SMART WD40_4 2 40 IPR001680 GO:0005515
Amo11g1544 170 SMART WD40_4 131 170 IPR001680 GO:0005515
Amo11g1544 170 SMART WD40_4 85 128 IPR001680 GO:0005515
Amo11g1544 170 SMART WD40_4 43 82 IPR001680 GO:0005515
Amo11g1544 170 ProSiteProfiles Trp-Asp (WD) repeats profile. 17 49 IPR001680 GO:0005515
Amo11g1544 170 PANTHER AUTOPHAGY PROTEIN 16-LIKE 2 170 IPR045160 GO:0000045
Amo11g1544 170 Gene3D - 102 170 IPR015943 GO:0005515
Amo11g1544 170 Gene3D - 4 101 IPR015943 GO:0005515
Amo11g1544 170 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 85 IPR001680 GO:0005515
Amo11g1544 170 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 2 170 - -
Amo11g1544 170 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 137 IPR001680 GO:0005515
Amo11g1544 170 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 170 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1544 Amo-Chr11 64197356 64197868 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1544 2 91 Miscellaneous Gene Families AT5G08390 29.670 1.08e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1544 K17890 - gmx:100778336 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1544 11 64197356 64197868 Amo11g1544 11 64197356 64197868 ECH