Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1336 AAAACTTCCGTAGTCCCCTCTCCTTCTACAATAAACCCCAAACCACGACAATTCACTACCACAACAAGACACAACACAATGCATAAGAGTCCCTCAGGTTCCACACTGGGCCCAGGTGGGCTCGACCTAACCCAGGCCTTCTTCAGGCCCATAACAAACGCCGCACCACCCTCGCCAACCAAGCGCCAAACCAAGATCTCAGTCATCGGCGTCGGCAACGTCGGGATGGCCATTGCTCAGACCATCCTCACTCAAGATCTCACCGACGAGCTCGTCCTCATCGACAACAAGGCCGACAAGCTCCGCGGCGAGATGCTCGACCTCCAGCACGCCGCCGCCTTCCTTCCCCGCACAAAGATCTACGCCTCCGTGGACTACGCCGTCACCGCCGGCTCCGACCTCTGCATAATCACCGCAGGTGCACGCCAGAACGCTGGCGAGTCAAGGCTGAACCTGCTCCAGAGGAACCTCGCGCTGTTCAAGAGCATTGTGCCACCGCTTGCGCGGTACTCACCGCAGACGGTGCTGCTCATCGTTTCGAACCCCGTGGACGTTCTGACTTACTTGGCGTGGAAGCTCTCCGGTTTTCCATCGAACCGGGTTATCGGGTCGGGTACGAACTTGGACTCCTCAAGGTTCAGGTTCCTCATCGCGGATCATCTCGACGTCAACGCTCAGGACGTGCAGGCTTACATAGTGGGGGAACATGGGGATAGCTCGGTGGCTCTGTGGTCTAGCATCAGCATTGGTGGTGTTCCAGTTCTGAGCTTTTTGGAGAAACAGCAGATAGCATACGAGAAGGAAACATTAGAGAACATACACAAAGCAGTGATAGACAGCGCCTATGAAGTTATCAGCCTCAAAGGCTACACTTCTTGGGCCATTGGCTACTCTGTTGCTAGCTTGGCGCGCTCTATTCTCCGGGACCAAAGGAAGATCCACCCTGTCTCTGTTTTGGCAAAAGGCTTCTACGGCATTAGCAACGAAGTGTTCCTCAGCTTGCCAGCACAGCTTGGTCGCGGAGGAGTGTTGGGTGTGACCAATGTGCACTTGAATGAAGAGGAGTTACAAAGGCTCAGGGACTCTGCCAAGACCATACTTGAGGTGCAGACTCAGTTAGATCTTTAA 1128 0.5479 KTSVVPSPSTINPKPRQFTTTTRHNTMHKSPSGSTLGPGGLDLTQAFFRPITNAAPPSPTKRQTKISVIGVGNVGMAIAQTILTQDLTDELVLIDNKADKLRGEMLDLQHAAAFLPRTKIYASVDYAVTAGSDLCIITAGARQNAGESRLNLLQRNLALFKSIVPPLARYSPQTVLLIVSNPVDVLTYLAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISIGGVPVLSFLEKQQIAYEKETLENIHKAVIDSAYEVISLKGYTSWAIGYSVASLARSILRDQRKIHPVSVLAKGFYGISNEVFLSLPAQLGRGGVLGVTNVHLNEEELQRLRDSAKTILEVQTQLDL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1336 375 Hamap L-lactate dehydrogenase [ldh]. 63 374 IPR011304 GO:0004459|GO:0005737
Amo11g1336 375 CDD LDH_1 61 372 - -
Amo11g1336 375 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 27 374 - -
Amo11g1336 375 TIGRFAM L-LDH-NAD: L-lactate dehydrogenase 68 366 IPR011304 GO:0004459|GO:0005737
Amo11g1336 375 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 50 203 IPR036291 -
Amo11g1336 375 Gene3D - 60 205 - -
Amo11g1336 375 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 206 368 IPR022383 GO:0016616
Amo11g1336 375 PANTHER L-LACTATE DEHYDROGENASE 27 374 - -
Amo11g1336 375 MobiDBLite consensus disorder prediction 1 36 - -
Amo11g1336 375 Pfam lactate/malate dehydrogenase, NAD binding domain 64 203 IPR001236 GO:0016491
Amo11g1336 375 ProSitePatterns L-lactate dehydrogenase active site. 233 239 IPR018177 GO:0004459
Amo11g1336 375 PRINTS L-lactate dehydrogenase signature 65 89 IPR001557 GO:0016616|GO:0019752
Amo11g1336 375 PRINTS L-lactate dehydrogenase signature 177 197 IPR001557 GO:0016616|GO:0019752
Amo11g1336 375 PRINTS L-lactate dehydrogenase signature 90 114 IPR001557 GO:0016616|GO:0019752
Amo11g1336 375 PRINTS L-lactate dehydrogenase signature 201 219 IPR001557 GO:0016616|GO:0019752
Amo11g1336 375 PRINTS L-lactate dehydrogenase signature 231 244 IPR001557 GO:0016616|GO:0019752
Amo11g1336 375 Gene3D - 206 373 IPR015955 GO:0003824|GO:0016616
Amo11g1336 375 SUPERFAMILY LDH C-terminal domain-like 204 372 IPR015955 GO:0003824|GO:0016616
Amo11g1336 375 PIRSF Lac_mal_DH 60 374 IPR001557 GO:0016616|GO:0019752
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1336 Amo-Chr11 46342918 46345301 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1336 K00016 - zju:107418882 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1336 11 46342918 46345301 Amo11g1336 11 46342918 46345301 ECH