Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0388 ATGCACCTTGCAACTGTTGATGATTTTCTCCTCCAACCGCTTTTCACGCGTTATGTATCTGCTTCGTTGAACCTAATCCTATTAATTGCGCTGCTTGTGTCATGGATATGGGAGAAAGTTCATGCGAATGTGAACCATAGAGAAAACAATGAAAGAATTCGATTACGTAGTGGTGGATTCTTGTACTTCAAACAAGGTCCACTTTGTAGCTTAGCTATTTGTGTGTTCTACCTTATGCTGTGCTTGCTAACCTACTTTTACTTGTATAAAAATGATGGTGGTACTGGTTCCTCAAACGAAGTTGTTGTTGCAATTTCTGATTTTGCTCTTAGATCACTTGCTTGGGCTGTTGTTTGTGGCTATTTGCAATTTGGAAGCTCCGGTTCTTGGGGACCTTTCTCCTCAAGAAACTTGAGGATTTGTTGCTGGGTGTATGCTGTTGTTTCCTTTTGTTGCATTGTAATAGACTTTATAATCTATGAAAAGCAAGCTTTCTTGCCGATTATGTATCCTGTTTCCGATATAAGTGGTTTTATTAGTGCTTTATTTCTGTGTTATTTGGGGTTTTCCGGAAACCATGTTGTTAAGAATGCCCCTCTTGAAGAAGCCCTTTTGAATGATGAATCTTTGGTGAGGAACGGTTGTAATCGCAATYAAACCAGAGGAGATGGAAATTCYTRGAGCTATTACAATGCTGGATTCTTTAGTTTTCTTACATTCTCTTGGTTGAGTCCATTGATATCTCTAGGCAATAACAAGGCTTTAGATATCGAGGATCTTCCTGTTCTTCATATCAATGATAGTGCCTATGGGGCTTTTCCAAATCTTAGAGATAAGCTTGAGTCACAATGTGGTGATGATGGGAAAGTAACCACTTTTAAGTTGGTTAAGGCAATGTTCGTGTCAACATGGCAGCTGATCTTACTGTCAGCCTTYTTTGCAWTCMTGTACACTTGTGCTTCTTATGTTGGTCCTTATTTGATTGATTTCCTTGTTCAATACCTCAATGGGGAGCAAATGTTTGAAAACGAAGGCTATGTTTTGGTATTGGCATTTGCTGTTGGTAAGTTTGTGGAGTGCCTCTCGCAGAGACATTCCATGTTCAGGTTCCAGCAGATTGGAGTTAGGATACAATCAATGTTGGTGGGGACGATCTATGCTAAAGGTTTGAAGCTTTCGTGTAAATCGAAGGATGCTCATAGTAGCGGAGAAATCGTTAACTTGTTGACTGTCGATGCTTCAAGGATTGGTGAATTTTGTTGGTACATGCATGATCCATGGATGGCTGTTTTGCAAGTTGCTTTGGCCTTGTTGATTCTGTATCGGAGTGTTGGGCTTGCTTCAATTGCTGCTTTTGTTGCCACCGTAATTGTGATGTTGCTAAACCTGCCAGTGGCATCATTGCAAGAAAAATACCAAAATAAGTTAATGGAGTTCAAAGACAAACGAATGAAGTCAACATCTGAGATCTTAAAGAATATGAGGATTCTGAAACTGCAAGCWTGGGAGATGAAGTTCTTAGAGAAGATCATTCAGCTTAGGAAGGCTGAGGAGATATGGCTAAAGAAATTTGTCATTGGTTCAGTGATTATTAGATTTCTCTTCTTTAATGCCCCKWCTTTTGTTGCTGTGGTWACTTTTGGTACATGTGTTCTTATGGGCATACCACTTGAATCAGGGAAGATCTTATCTGCACTCGCAACTTTCCGAATTCTTCAAATTCCCATATATAGCCTCCCTGACACAATTTCAATGATAGCACAAACTAAGGTCTCACTTGATAGGATCACATCATTTCTTTGTCTAGATGACTTGCAAGCCAATGCAGTAGAGAAACTTCCCCATGGTAGTTCTGATTTAGCAGTTGAAGTTATAGATGGAAATTTCTCATGGGATTCCTCTTCCTCTAGTACTAATCTGGCGAACATAAATCTCAAAGTTTTTCATGGCATGAGGGTTGCTGTTTGTGGCACTGTTGGATCTGGCAAGTCAAGTTTACTTTCTTGTGTGATTGGTGAAGTCCCAAAGCTATCTGGGACCATTAAAGTGTGTGGAACAAAGGCTTATGTTTCTCAGTCGCCATGGATACAAAGTGGTAAGATAGAAGATAACATACTATTTGGCAAAGAGATGGACAGGGAAAAGTATGAGAAGGTACTAGAAGCATGTTCCTTAACAAAAGACCTCGAGGTTCTATCATTTGGTGACCAGACTATTGTTGGTGAGAAAGGAATCAATTTGAGTGGTGGACAGAAGCAAAGATTACAAATAGCTCGCGCTCTTTACCAAGATGCTGATATATACCTGTTTGATGACCCTTTCAGTGCTGTGGATGCTCATACAGGATCTCATCTTTTTAAGGAGTGTATACTCGGCCTTTTACAAACAAAAACTGTGATATACATTACTCATCAGATAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAAAGATGGAAGGATAACTCAATCTGGAAAATACAATGACATTCTCAAGTCAGGCACTGATTTTATGGAACTTGTAGGGGCACATCAGGAAGCTTTGTCTTCAATTAAATCTTTAGAGAGAAGGACTTCAAGTAAATCTTTAGAGAGAAGGCTTTCGAGTAAATCTTTTGAGAGAAGTCCCACGTCTAAGACATTAGGTCTCACCGTGGAGGACAGTGATTCACTAAGTTCTTTTGGAGAGCAAGACTTGGAAAACATTGATGATCAAAATGGTAAACCAGATGAAATAGTTGATAAAAAAGGCCAACTTGTTCAAGACGAAGAACGAGAAAAGGGTAGAGTTGAGTTTAAAGTCTACTGGAAATACATGACAACAGCATATGGAGGTGTTCTTGTACCCTTCATATTACTTTCACAAATACTTACTGTAGCTTTGAATGTTGCGAGTAATTACTGGATGACCTTGGCAACTCCAGTTTCTGCAACTGCAGAACCTGCTGTTGGAAGTGTTATGCTTATGGCTGTCTATGCTGCTTTAGCAATTGGAAGTTCCATTGGCAACCTTGTCAGAACAATGCTTACTGTGATATCTGGATATGTGACTGCAACCATACTCTTCAATAAATTGCATATGTGCCTTTTTCGAGCACCAATGTCATTTTTTGATGCCACCCCAAGTGGGCGAATCCTTAATAGAGCTTCAACAGACCAAAGTGCAATAGATATTGACATTCCAAGTGTATTATGGGCAGTTACCTTTAATCTGGCTTTCGTCGTGGGAAGTATTGCAGTGATGTCTCAAGCTGCATGGCAAGTGTTTATTGTATTTATTCCGGTGGTCGCAGCATGCATTTGGTACCAGCAATACTATTCAGCATCAGCACGGGAATTGGCACGGTTAGTTGGTATATGCCAAGCTCCTGTAATACAACATTTTTCTGAAACCATTTCTGGATCTACAACCATAAGAGCTTTTGAGCAAGAATCAAGGTTCGGTAACGTAAACATGAAATTGACGGATAGATATTCCCTACCAAAGATGTTTTCTGCTATAGCAATGGAATGGTTGTGTTTCAGATTGGATATTTTATCCTCCATCACATTTGCGTTCTGTTTGATTTTCTTGGTATCTTTTCCAAATGCAATTACTCCTGGCATTGCGGGGTTGGCTGTGACGTATGGGCTCAATTTAAATTCACAAGTGGTTTATATAGTTTGGTATCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATTTTTCAATACACCTCCATCCCAAGTGAACCTCTTCTAGTCATAGAAGACAACCAACCTGATCCTTCATGGCCACCATTCGGGGAGGTTCATATCCAAGAGCTACAGGTCAGGTATGCTCCTCACTTACCACTTGTATTACGTGGACTTACTTGCACTTTCGCTTCTGGAGCAAAAAACGGCATTGTGGGAAGAACTGGAAGCGGAAAAACAACTCTAGTGCAAACACTTTTCCGGCTTGTTGAGCCAGTTGCTGGAAAAATATTGATTGATAGCATCAATATATCTTCAATTGGAATTCATGATTTAAGATCCAAACTAAGCATTATTCCACAGGATCCAACAATGTTTGAAGGGACTATAAGGAACAACTTAGATCCACTGGAAGAATACACAGATGAACAAATTTGGGAGGCTTTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAGAAAGAAGAGAAGCTGGACTCCATAGTTACCGAGAATGGCGAAAATTGGAGTATGGGTCAACGACAGTTGGTCTGCCTTGGCCGCGTCTTACTAAAGAAAAGCAAGATCCTAGTGCTTGACGAGGCTACGGCATCAGTTGATACTGCCACAGATAATATTATTCAGCAAACAGTTAAGCAGAATTTTTCAGACTGCACAATAATTACAATTGCTCATAGAATAACTTCAATCCTTGACAGACTRATTGAGGAATATGATTCACCAAAAAAGTTGCTTAAGAACAAATCTTCAGCTCTTGCTCAACTAGTTGAAGAATACACTCGAAGGTCAAACTCTGGTTTTGAAAGTTGA 4518 0.3958 MHLATVDDFLLQPLFTRYVSASLNLILLIALLVSWIWEKVHANVNHRENNERIRLRSGGFLYFKQGPLCSLAICVFYLMLCLLTYFYLYKNDGGTGSSNEVVVAISDFALRSLAWAVVCGYLQFGSSGSWGPFSSRNLRICCWVYAVVSFCCIVIDFIIYEKQAFLPIMYPVSDISGFISALFLCYLGFSGNHVVKNAPLEEALLNDESLVRNGCNRNXTRGDGNSXSYYNAGFFSFLTFSWLSPLISLGNNKALDIEDLPVLHINDSAYGAFPNLRDKLESQCGDDGKVTTFKLVKAMFVSTWQLILLSAFFAXXYTCASYVGPYLIDFLVQYLNGEQMFENEGYVLVLAFAVGKFVECLSQRHSMFRFQQIGVRIQSMLVGTIYAKGLKLSCKSKDAHSSGEIVNLLTVDASRIGEFCWYMHDPWMAVLQVALALLILYRSVGLASIAAFVATVIVMLLNLPVASLQEKYQNKLMEFKDKRMKSTSEILKNMRILKLQAWEMKFLEKIIQLRKAEEIWLKKFVIGSVIIRFLFFNAPXFVAVVTFGTCVLMGIPLESGKILSALATFRILQIPIYSLPDTISMIAQTKVSLDRITSFLCLDDLQANAVEKLPHGSSDLAVEVIDGNFSWDSSSSSTNLANINLKVFHGMRVAVCGTVGSGKSSLLSCVIGEVPKLSGTIKVCGTKAYVSQSPWIQSGKIEDNILFGKEMDREKYEKVLEACSLTKDLEVLSFGDQTIVGEKGINLSGGQKQRLQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECILGLLQTKTVIYITHQIEFLPDADLILVMKDGRITQSGKYNDILKSGTDFMELVGAHQEALSSIKSLERRTSSKSLERRLSSKSFERSPTSKTLGLTVEDSDSLSSFGEQDLENIDDQNGKPDEIVDKKGQLVQDEEREKGRVEFKVYWKYMTTAYGGVLVPFILLSQILTVALNVASNYWMTLATPVSATAEPAVGSVMLMAVYAALAIGSSIGNLVRTMLTVISGYVTATILFNKLHMCLFRAPMSFFDATPSGRILNRASTDQSAIDIDIPSVLWAVTFNLAFVVGSIAVMSQAAWQVFIVFIPVVAACIWYQQYYSASARELARLVGICQAPVIQHFSETISGSTTIRAFEQESRFGNVNMKLTDRYSLPKMFSAIAMEWLCFRLDILSSITFAFCLIFLVSFPNAITPGIAGLAVTYGLNLNSQVVYIVWYLCNLENKIISVERIFQYTSIPSEPLLVIEDNQPDPSWPPFGEVHIQELQVRYAPHLPLVLRGLTCTFASGAKNGIVGRTGSGKTTLVQTLFRLVEPVAGKILIDSINISSIGIHDLRSKLSIIPQDPTMFEGTIRNNLDPLEEYTDEQIWEALDMCQLGDEVRKKEEKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQNFSDCTIITIAHRITSILDRLIEEYDSPKKLLKNKSSALAQLVEEYTRRSNSGFES* 1506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0388 1505 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 198 1504 - -
Amo11g0388 1505 CDD ABC_6TM_ABCC_D1 309 596 IPR044746 GO:0140359
Amo11g0388 1505 CDD ABCC_MRP_domain1 622 822 - -
Amo11g0388 1505 Pfam ABC transporter transmembrane region 308 573 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo11g0388 1505 Pfam ABC transporter transmembrane region 952 1204 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo11g0388 1505 Gene3D - 603 871 IPR027417 -
Amo11g0388 1505 SMART AAA_5 649 822 IPR003593 -
Amo11g0388 1505 SMART AAA_5 1294 1477 IPR003593 -
Amo11g0388 1505 ProSitePatterns ABC transporters family signature. 747 761 IPR017871 GO:0005524
Amo11g0388 1505 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 622 845 IPR003439 GO:0005524
Amo11g0388 1505 CDD ABCC_MRP_domain2 1266 1477 - -
Amo11g0388 1505 Gene3D - 1251 1495 IPR027417 -
Amo11g0388 1505 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 308 588 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo11g0388 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 620 844 IPR027417 -
Amo11g0388 1505 Pfam ABC transporter 1286 1433 IPR003439 GO:0005524
Amo11g0388 1505 SUPERFAMILY ABC transporter transmembrane region 949 1248 IPR036640 GO:0005524|GO:0016021
Amo11g0388 1505 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1268 1493 IPR003439 GO:0005524
Amo11g0388 1505 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 952 1231 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo11g0388 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1259 1468 IPR027417 -
Amo11g0388 1505 SUPERFAMILY ABC transporter transmembrane region 302 600 IPR036640 GO:0005524|GO:0016021
Amo11g0388 1505 CDD ABC_6TM_ABCC_D2 950 1243 IPR044726 GO:0140359
Amo11g0388 1505 Pfam ABC transporter 640 774 IPR003439 GO:0005524
Amo11g0388 1505 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 198 1504 - -
Amo11g0388 1505 Gene3D ABC transporter type 1, transmembrane domain 913 1249 IPR036640 GO:0005524|GO:0016021
Amo11g0388 1505 Gene3D ABC transporter type 1, transmembrane domain 283 602 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0388 Amo-Chr11 6252278 6263781 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0388 622 883 Calmodulin-binding Proteins AT2G36910 28.671 2.42e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0388 - K05666 gmx:106794105 2135.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0388 11 6252278 6263781 Amo11g0388 11 6252278 6263781 ECH