Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0348 ATGGAGGAAGGCGAAGGCGGGGATCCCATGGATCAGTTCCACCGTAACGAGGCTATATCCGCCGTCGCCGACGAGGGTTTCTTGGGCGAGGAAGACGACGATTACGAGGACCTTTACAACGACGTCAATGTCGGTGAGGGCTTCCTCCAATCGCTGCGTAAAAACGACGATCTAGCGTTTCGAAACGACGATGCCGTTCAGGACAACAGCAAGAAGCCCCAACAAGAAGCTGTCGCTGGGGTTTCGATTCCTGGTGTAGGTGGTGGTGGTGAGGGACCCGGTGGTGGTGGTGGTGGTGGGGCTGTGGATGGTGGTTCTAGGGTTTCTGGGTTTCAGAATCAGGGGTTTAGAGGGAATGATTTGGGTGCAAAACAGGGTACTGGTGGATCTGGAATTAGGGTTGAGTTGGGTCAGCCATCTGGGAAAGTGAGTGAAATTGAGGATCGGAGTGGAAATGGTGCTGGTGTTGGTGGTGGTGGTGCTTCTGCGGTGCAAGGGATTGGACAGCAGCCTCATGGTGGTGGTGGTGGTGTTGTTGGCTCCGTTGGGAATGAGGGTTTGGCCAGGCAAAGTGGTGGTGGCGGTGTTGGAGTTGCAGCTGGAGGAGATGTTAATAGGATTGGTGGGAATGGGATCGGGAACAGTGTGGGTGTAGTTAATACTATTAACACTGGTGGACCTGGACCTGGACCTGGACCTGGTGGCCCGGTGGGTGCTGGAAGTGCTGTTGCTGCTGGTGGTGGCGGCGGCGGTGGAGGTACCATATTGTTTGTGGGTGATTTGCATTGGTGGACTACCGATGCTGAACTGGAGGCTGAGCTCTGTAAGTACGGCCCTCTCAAGGAGGTGAAGTTTTTCGATGAGAAAGCTAGTGGGAAATCTAAAGGGTATTGCCAGGTTGAATTTTATGATCCTGCAGCTGCCACTGCCTGTAAGGAAGGCATGAATGGGCATATGTTTAATGGAAGGCCTTGTGTTGTTGCCTATGCTTCGCCTTTTACAGTTAAGAAAATGGGTGAGGCTCAGGTGAATAGGAACCAGCAGATGAACCAAACAGCAGCTCCTCAGGGAAGGAGGGGGCCTGCTGAGGCAGGGGCTAAGCCTGCTGGGAGTAATATTACAACTGGCGGTAACTACCAAGGGGGAGATGCAAATAGAGGTTATGGAAGGGGTAACTGGAGAGGGAATAATCCTGGGATGGGTAATAGGGGGCCTGTTAATCCTATGAGGAATCGAGGAGGTGGTATGGGTGGTAGAGGTATAATGGGAAATGGTGGGAATGGATTTGGACAGGGCATGGGTGCTACGCCTCCTATGATGCATCCTCAGTCAATGATGAATCAGGGATTTGATCCTGCATTTGGTGGTCCCATGGGTAGAATGGGTACCTATGGAGGCTTTCCTGGTGCTCCAACACCTCCATTCTCTGGCATTTTGCCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGCACCCCATGTTAATCCTGCCTTTTTTGGAAGAGGGATGCCTGTGAATGGCATGGGGATGATGCCTGGAGCTGGTATGGATGGACCTAATATGGGAATGTGGTCTGATCCCAATATGGGTGGATGGGGTGGTGAAGAGCCTGGTGGTGGCAGGGCCGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCGGATCATCAGTATGGTGAGGCAAGTCATGATAGAAGTAACTGGCCTAATTCTATGAGGGAAAAAGATAGAGGTTCGGAAAGGGACTGGTCTGGCACATCTGAGAGGAGGTACAGGGATGATAGAGATCAAGGATATGAGAGAGATGCACCCAGAGAAAAAGATGTGGGACATGATCATGAATGGTCCGAAAGAAGGCATCGTGATGACAGGGACATTGGTCGAGAAAGATCTCGAGACCGTGATAGGGAAAAGTCTAGAGACCGCGATCGTGACCGTGATCGTGACCGCGAAAGGGATCGTGAACGAGATCGTGATCGTGACAGGTACAGGGAAGACAGGGACAAATATGCAGATCATCATAGGTATCGTGATCGTGAAGCAGAGCATGATGATGAATGGGAAAGGGGGCGGTCATCGAGGACACACAGCAAATCACGGTTATCTCAAGAGGAGGAACATCATTCTAGGCCCAGAGATGCTGATTATGGGAAGCGGAGGCGGATGACCTCCGAGTAG 2178 0.5202 MEEGEGGDPMDQFHRNEAISAVADEGFLGEEDDDYEDLYNDVNVGEGFLQSLRKNDDLAFRNDDAVQDNSKKPQQEAVAGVSIPGVGGGGEGPGGGGGGGAVDGGSRVSGFQNQGFRGNDLGAKQGTGGSGIRVELGQPSGKVSEIEDRSGNGAGVGGGGASAVQGIGQQPHGGGGGVVGSVGNEGLARQSGGGGVGVAAGGDVNRIGGNGIGNSVGVVNTINTGGPGPGPGPGGPVGAGSAVAAGGGGGGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFFDEKASGKSKGYCQVEFYDPAAATACKEGMNGHMFNGRPCVVAYASPFTVKKMGEAQVNRNQQMNQTAAPQGRRGPAEAGAKPAGSNITTGGNYQGGDANRGYGRGNWRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGNGGNGFGQGMGATPPMMHPQSMMNQGFDPAFGGPMGRMGTYGGFPGAPTPPFSGILPSFPGVGGVGLPAPHVNPAFFGRGMPVNGMGMMPGAGMDGPNMGMWSDPNMGGWGGEEPGGGRAGESSYGEEAASDHQYGEASHDRSNWPNSMREKDRGSERDWSGTSERRYRDDRDQGYERDAPREKDVGHDHEWSERRHRDDRDIGRERSRDRDREKSRDRDRDRDRDRERDRERDRDRDRYREDRDKYADHHRYRDREAEHDDEWERGRSSRTHSKSRLSQEEEHHSRPRDADYGKRRRMTSE* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0348 725 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 325 IPR000504 GO:0003723
Amo11g0348 725 Gene3D - 251 364 IPR012677 -
Amo11g0348 725 MobiDBLite consensus disorder prediction 63 183 - -
Amo11g0348 725 SMART rrm1_1 255 328 IPR000504 GO:0003723
Amo11g0348 725 CDD RRM_CFIm68_CFIm59 256 329 - -
Amo11g0348 725 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 332 IPR000504 GO:0003723
Amo11g0348 725 MobiDBLite consensus disorder prediction 556 725 - -
Amo11g0348 725 MobiDBLite consensus disorder prediction 349 406 - -
Amo11g0348 725 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 212 724 IPR034772 -
Amo11g0348 725 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 204 IPR034772 -
Amo11g0348 725 SUPERFAMILY RNA-binding domain, RBD 253 346 IPR035979 GO:0003676
Amo11g0348 725 MobiDBLite consensus disorder prediction 520 725 - -
Amo11g0348 725 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 212 724 - -
Amo11g0348 725 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0348 Amo-Chr11 5469279 5472856 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0348 K14398 - gmx:100813702 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0348 11 5469279 5472856 Amo11g0348 11 5469279 5472856 ECH