Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0216 ATGTCTTACTCAAGGAGATCAAGGTATTCTCCTTCTCCTTCTCCATCCCCATACAAGGGGTACAGCAGGTACAGCAGGTCCTTATCCAGGTCTCTTTCAAGGTCAAGATCGAGAAGCCGTTCAAGGAGCGTCTCAAGTGATGCAGAAAATCCTGGAAATAACTTGTATGTGACTGGATTATCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCAGCTGAAGGAAAGGTCATAGATGTACATCTTGTAGTTGATCCGTGGACAAGAGAATCACGTGGGTTTGGCTTTGTGACAATGGCAAATCTTGAGGATGCTGATCGGTGTGTGAAATATTTAAACCGCTCTGTACTTGAAGGGCGTGTAATCACAGTGGAGAAGGCCAGAAGGCGACGTGGCCGAACCCCAACGCCTGGAAGATATCTTGGGCTAAGGACTATTCGAGCACGCCGTCACTCACGCTCCCCAAGCTACTCTTCTCGGCGCTCTCCTAGCTATTCCCCCTACCGAAGAAGCTATAGTCGTTCGCCATATTCTCCAGATCGTAGTAGGAGTCCCTCTTATTCTCCTGACTATCGCCGTAGAAGGTCTTACTCTCCTGACTACCGGCGAAGGAGGTCTTACTCTCCATATTACTACAGTCGACGCAGGTCCCCATATTCTCCATATTATAGTCGTCGCAGGTCGTATTCGCGATATGATCGTTATGAGCGGCGGAGGTCATATTCGCGGTCTCAATCCCCATACAGCAGGTCACCTGTCAGTTATCGTGACAGATCATACTCTCCCTATGACTCAAGGTATGACTCGCCCGATGATCGCTATTACAGAAGGCACCACAACAGGTCAGTTTCTCCAAGTGTCTCCCCTCCCCCAAGGCGGAGGTCGAGGAGAAGCTACTCGCGGAGTGTCACTCCTGTTCGAATGAGGAGCTGCTCTCGAAGCATCTCTCCCCGACGCAGCAGGAGGAGCTACTCACGAAGTGTTTCTCCACCAAGGAAAAGTTCTGGGAGGAGCCATTCAAGAAGCTCTAAAAGGAGTGGTGGTTATTCCAAACGTAGTAGGAGCCCAAGTCCAAGTGTGAGTGCAAGTTCAAGATCATTTTCAAGGTCCAACACTCCTGGATCTGCTTCTCCTTCAACTTAG 1149 0.4961 MSYSRRSRYSPSPSPSPYKGYSRYSRSLSRSLSRSRSRSRSRSVSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMANLEDADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTIRARRHSRSPSYSSRRSPSYSPYRRSYSRSPYSPDRSRSPSYSPDYRRRRSYSPDYRRRRSYSPYYYSRRRSPYSPYYSRRRSYSRYDRYERRRSYSRSQSPYSRSPVSYRDRSYSPYDSRYDSPDDRYYRRHHNRSVSPSVSPPPRRRSRRSYSRSVTPVRMRSCSRSISPRRSRRSYSRSVSPPRKSSGRSHSRSSKRSGGYSKRSRSPSPSVSASSRSFSRSNTPGSASPST* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0216 382 MobiDBLite consensus disorder prediction 229 245 - -
Amo11g0216 382 MobiDBLite consensus disorder prediction 323 338 - -
Amo11g0216 382 MobiDBLite consensus disorder prediction 246 260 - -
Amo11g0216 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 124 IPR000504 GO:0003723
Amo11g0216 382 MobiDBLite consensus disorder prediction 159 187 - -
Amo11g0216 382 PANTHER TRANSFORMER-2-RELATED 10 222 - -
Amo11g0216 382 PANTHER TRANSFORMER-2-RELATED 205 289 - -
Amo11g0216 382 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 10 222 - -
Amo11g0216 382 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 205 289 - -
Amo11g0216 382 SUPERFAMILY RNA-binding domain, RBD 42 158 IPR035979 GO:0003676
Amo11g0216 382 CDD RRM_RBMX_like 52 129 - -
Amo11g0216 382 MobiDBLite consensus disorder prediction 130 382 - -
Amo11g0216 382 MobiDBLite consensus disorder prediction 44 59 - -
Amo11g0216 382 MobiDBLite consensus disorder prediction 351 382 - -
Amo11g0216 382 MobiDBLite consensus disorder prediction 1 59 - -
Amo11g0216 382 SMART rrm1_1 54 127 IPR000504 GO:0003723
Amo11g0216 382 MobiDBLite consensus disorder prediction 263 281 - -
Amo11g0216 382 Gene3D - 5 137 IPR012677 -
Amo11g0216 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 131 IPR000504 GO:0003723
Amo11g0216 382 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0216 Amo-Chr11 3275338 3278998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0216 54 158 Eukaryotic Initiation Factors Gene Family AT3G16380 29.524 1.08e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0216 - - adu:107494646 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0216 11 3275338 3278998 Amo01g0455 01 6739520 6743037 hybridization