Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0017 ATGGCTTCCTCCATCACAAGCTCTTCTTCAAGGTTGTTTCCCATTACCAGAGAATCACAACCCACTTCCCATTCCACCTTAAACTTTTCAAAGTTTGCATCTTTTTCTTCTTCTTCTTCTTCAGCTTCAGGTTCCAAAGCCTCCTCTTATATCTCTTGCTCTCTCACCAGGGACCCTTCTGTTCTGCCATTGGAGGAGCAGTCAAAGCTCTCTAATGGGTCAGTTCTCTTTCAGAGACCAGATTCCCTTGGGAGGTTTGGAAAGTTTGGTGGGAAATATGTCCCTGAGACTCTAATCCATGCCCTCACCGAGCTTGAGGCTGCATTTCATTCCCTTTCTGCTGATGAAGATTTTCAGAAAGAGCTGGCTGGTATTCTTAGAGATTATGTTGGTCGAGAGAGTCCTCTTTATTTTGCAGAAAGGTTGACAGAGCATTATAAGAGGGCGAATGGTGAAGGGCCTCATATTTACCTAAAGAGGGAAGATCTTAATCACACTGGTGCTCATAAGATCAATAATGCTGTTGCTCAAGCTTTGCTTGCCAAGTGTTTGGGGAAAAAACGAATTATTGCTGAAACTGGAGCTGGTCAGCATGGTGTCGCAACTGCTACTGTATGCGCTCGATTTGGTTTGGAATGCATTGTTTATATGGGGGCACAGGACATGGAAAGGCAGGCTCTGAATGTCTTCAGAATGCGTCTTCTCGGTGCTGAGGTGAGACCGGTTCATTCTGGAACTGCCACACTTAAGGATGCTACATCAGAGGCTATAAGGGATTGGGTGACAAATGTGGAGACAACTCATTATATTTTGGGTTCGGTTGCTGGGCCGCATCCATATCCAATGATGGTAAGAGAGTTCCATGCCGTGATTGGCAAGGAAACCAGAAAACAAGCYTTGGAAAAATGGGGAGGGAAACCGGATGTTCTGATTGCATGTGTCGGAGGAGGTTCAAATGCCATGGGACTTTTCCATGAATTTGTCGATGACAAAGACGTTAGACTAATTGGCGTGGAAGCTGCTGGATTTGGCTTGGACAGTGGCAAGCATGCTGCGACATTAACAAAGGGAGAAGTTGGGGTTCTGCATGGAGCTATGAGTTATCTGCTGCAGGATGATGATGGACAAATTGTCGAGCCTCACTCAATTAGTGCAGGCTTGGACTACCCTGGTGTAGGACCGGAACATAGCTTTTTGAAAGATATTGGGCGCGCTGAATATTATAGCATCACTGATGAAGAAGCACTAGAAGCTTTCAAGAGAGTTTCGCGTCTCGAAGGCATAATTCCGGCTCTAGAGACATCTCATGCTTTGGCCTATRTGGAGAAAGTGTGTCCAACTCTTCCTAATGGCGCCAAAGTTGTGGTRAACTTCAGTGGCAGAGGTGACAAGGATGTTCATACCGCCATCAAGTACTTGAAGGTTTGA 1428 0.4566 MASSITSSSSRLFPITRESQPTSHSTLNFSKFASFSSSSSSASGSKASSYISCSLTRDPSVLPLEEQSKLSNGSVLFQRPDSLGRFGKFGGKYVPETLIHALTELEAAFHSLSADEDFQKELAGILRDYVGRESPLYFAERLTEHYKRANGEGPHIYLKREDLNHTGAHKINNAVAQALLAKCLGKKRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGKPDVLIACVGGGSNAMGLFHEFVDDKDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIVEPHSISAGLDYPGVGPEHSFLKDIGRAEYYSITDEEALEAFKRVSRLEGIIPALETSHALAYXEKVCPTLPNGAKVVVNFSGRGDKDVHTAIKYLKV* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0017 475 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 80 473 IPR036052 -
Amo11g0017 475 PANTHER TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED 24 475 - -
Amo11g0017 475 ProSitePatterns Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 163 177 IPR006653 GO:0004834|GO:0006568
Amo11g0017 475 MobiDBLite consensus disorder prediction 1 24 - -
Amo11g0017 475 Hamap Tryptophan synthase beta chain [trpB]. 79 473 IPR023026 GO:0000162|GO:0004834
Amo11g0017 475 PANTHER TRYPTOPHAN SYNTHASE-RELATED 24 475 - -
Amo11g0017 475 Pfam Pyridoxal-phosphate dependent enzyme 131 460 IPR001926 -
Amo11g0017 475 TIGRFAM trpB: tryptophan synthase, beta subunit 84 472 IPR006654 GO:0004834|GO:0006568
Amo11g0017 475 PIRSF Trp_syn_beta 69 475 IPR023026 GO:0000162|GO:0004834
Amo11g0017 475 CDD Trp-synth_B 101 468 IPR006654 GO:0004834|GO:0006568
Amo11g0017 475 Gene3D - 131 466 IPR036052 -
Amo11g0017 475 Gene3D - 86 288 IPR036052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0017 Amo-Chr11 128726 132876 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0017 K01696 - gmx:100792812 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0017 11 128726 132876 Amo11g0017 11 128726 132876 ECH