Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2532 ATGGGTTGTTTGGCGCCACAACTACCACTCTCATCCCATCACCTCCATAACCGCCGCACTCTTGACGCATCCACTCAAATCCCAAAATCATCCCTCACTCCCTCAATCCACCAAAACCACAATCTCCGCCTCGCCGGCAATTTTAACGACGCCGTGACCTCTCTCCACTCCAACTCCAACTCCAACTACAACGACGCCGTTTCAACGTCACAATCCATTACAGCGCTGCTCCAGCAATGCATCCTCCACAAAAACATCCAACTTGGCCGGACCCTTCATTCACTCATCTCCGCTTCCCCTCACCTCCGCAACGACGTTGTTCTCACTACCCGCTTAATCACCATGTACGCCGCATGCGCCTCACCCTCCGAATCACGTTCAGTGTTCCAGAATTTTCCCAACAAGAAGGACCTATTCCTCTACAACGCGCTTCTCAGCGGCTACGCGCGCAACGCGCTCTACCGCGACGCCATTTTGCTCTTCGTTGAATTGGTCTCCGTCGCAGGGCTTCTGCCGGACAATTTCACGCTGCCGTGTGCTGTCAAGGCCTGCGCCGGGCTCACGGAGGTGGAACTCGGGGAAGCGCTTCACGCGCTTGCGTTGAAGCTGGGACTGTGCTCTGATTCGTTTGTGGGGAATGCGCTTATTGCTATGTATGGGAAGTGTGGGTTTGTTGAGAGTGCGTTCAAGGTGTTTGAGAAAATGGCTTGGAGAAACTTGGTTTCCTGGAACTCAATTATGCTCGTGTGCTCGGAGAACGGGCTTTTTGATGAGATTTGTGGTCTGTTTAAGGGGCTTTTGTTGAATGGTGGTGGTGATGAAGGTTCGGTACCTGATGTTGTTACTGTGGTCACAATGGTTCCTGTGGTTGCTGCAATGGGTGAAGTGAAATTGGGGATGCTGCTTCATGGTTTGGCTTTGAAACTGGGGCTTTGTGGTGACTTGAAGGTTAGTAATTCACTTATGGATATGTATTCGAAATGTGGTTACTTGTGTGAGGCGCGAGTTGTGTTTGATTTGATCAGTGACAAGAATGTTGTGTCGTGGAATTCTATGATTAGAGGGTACTCCAAGGCTGGTGATTCTCACGGAACATTTGAGCTGCTACGGAAGATGACCATGGAAGAGAAAATATTGGTAAACGAGGTGACAGTGTTGAATGTTCTGCCAGCTTGTTTAGAGAAGATTCACTTGTTAAGCTTGAAAGAGATTCACGGTTATGCCCTTAGGCGTGGGCTTCAGAATGATGAATTAGTAGCCAATGCTTTTGTTGCTGCGTACCCAAAGTGTGGTTCAATGGATTGTGCTGAGCGTGTGTTTAATGGAATGGTGGGGAAAACTGTGAGCTCTTGGAATGCATTGATTGGCGCCCTTGCGCAAAATGGATTTCCTGAAAAGGCTTTAGACTTGTACCTTGTGATGACGGATTCTGGGTTGGATCCTGATTGGTTTACAATTGGGGCCATTCTACTCGCTTGTGCCCAACTCAAACTCCTACGCTCTGGCAAGGAGATTCATAATTTCATGTTGCGAAATGGTTTAGAATCGGATGAGTTTATTGGGATATCGTTGCTGTCGCTTTATATTAACTGTGGAGAAATGTTGCCAGCAAAACTCCTTTTCGATAAGATGGAAAACAAAAGTTCAGTGTGCTGGAATACAATGATTACTGGCTTTTCACAGAATGGACTTCCTTGTGAGGCCCTTGATACATTCCGGCAAATGCTTTCAAGTGGAACTCACACTCAAGAGATTGCCTTAATGGGTGTTATGGATGCTTGTTCACAAGTTTCAGCCTTGCGGCTGGGAAAAGAAGTCCATTCCTTTGCACTGAAAGCTCATCTTACAGAGGATACCTTTGTAACTTGTTCACTGATAGACATGTATGCAAAATGTGGATGCATGGAACAATCTCAAAACATTTTTGAGAGGGTAATTGAGAAAGATGAAGCATGTTGGAATGTTATAATTGCAGGACATGGAGTTAATGGGAATGGACTGAAGGCATTAGAACTTTTTGAACTAATGCAAAGCTCGGGCTGCAGACCAGATTCTTATACATTTATGGGAGTTCTGATGGCCTGTAACCATACTGGCATGGTGACAGAAGGGTTAAAATATCTTGATCAGATGCAGAGTTTGCATGGCATAAAGCCAAAATTAGAGCATTATTCATGTGTGGTGGACATGCTTGGTCGGGCAGGACAACTCAGCGAAGCTCTAAAACTTGTAAACGAGCTGCCATATGAACCAGATTCGGGGATATGGAGTTCATTACTTAGTTCCTGTAGGAATTATCGTGATTTGGATATAGGGGAGAAAGCTTCCAAAAAGTTATTAGAGTTGGGGCCAGAAAAAGCTGAGAATTATGTACTGCTATCGAACTTATATGCTGGGCTAGGAAAATGGGACGACATGAGACAGGTGCGGCGGAAGATGAAGGAGATTGGCCTTCAGAAAGATGCAGGCTGCAGTTGGATTGAAATCGGAGGAAAGGTTTATAGATTTCTTGTTGGTGATGGAGGCTTTTTAGAATCAAAACAAGTTCAAAAGACTTGGGTTAAATTGGAGAAAAAAATAAGCAAAATTGGATATAAACCCGACACAAGTTGTGTGCTTCATGAACTGGAAGAAAAGGAAAAGATTAAAATTCTTAAGAGCCATAGTGAGAAGCTAGCAATTTCATTTGGTTTGTTACATACAGCTGAAGGTACAACGCTGAGGGTTTGTAAAAATCTTCGCATTTGCGTAGATTGTCACAATGCAATAAAATTAGTATCCAAGGTTGTTGAAAGGGAGATTATTGTTAGGGACAATAAGCGCTTTCATCATTTTAAAAGTGGACTTTGTTCCTGTGGAGATTATTGGTAG 2871 0.4472 MGCLAPQLPLSSHHLHNRRTLDASTQIPKSSLTPSIHQNHNLRLAGNFNDAVTSLHSNSNSNYNDAVSTSQSITALLQQCILHKNIQLGRTLHSLISASPHLRNDVVLTTRLITMYAACASPSESRSVFQNFPNKKDLFLYNALLSGYARNALYRDAILLFVELVSVAGLLPDNFTLPCAVKACAGLTEVELGEALHALALKLGLCSDSFVGNALIAMYGKCGFVESAFKVFEKMAWRNLVSWNSIMLVCSENGLFDEICGLFKGLLLNGGGDEGSVPDVVTVVTMVPVVAAMGEVKLGMLLHGLALKLGLCGDLKVSNSLMDMYSKCGYLCEARVVFDLISDKNVVSWNSMIRGYSKAGDSHGTFELLRKMTMEEKILVNEVTVLNVLPACLEKIHLLSLKEIHGYALRRGLQNDELVANAFVAAYPKCGSMDCAERVFNGMVGKTVSSWNALIGALAQNGFPEKALDLYLVMTDSGLDPDWFTIGAILLACAQLKLLRSGKEIHNFMLRNGLESDEFIGISLLSLYINCGEMLPAKLLFDKMENKSSVCWNTMITGFSQNGLPCEALDTFRQMLSSGTHTQEIALMGVMDACSQVSALRLGKEVHSFALKAHLTEDTFVTCSLIDMYAKCGCMEQSQNIFERVIEKDEACWNVIIAGHGVNGNGLKALELFELMQSSGCRPDSYTFMGVLMACNHTGMVTEGLKYLDQMQSLHGIKPKLEHYSCVVDMLGRAGQLSEALKLVNELPYEPDSGIWSSLLSSCRNYRDLDIGEKASKKLLELGPEKAENYVLLSNLYAGLGKWDDMRQVRRKMKEIGLQKDAGCSWIEIGGKVYRFLVGDGGFLESKQVQKTWVKLEKKISKIGYKPDTSCVLHELEEKEKIKILKSHSEKLAISFGLLHTAEGTTLRVCKNLRICVDCHNAIKLVSKVVEREIIVRDNKRFHHFKSGLCSCGDYW* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2532 956 Pfam PPR repeat 550 579 IPR002885 -
Amo10g2532 956 Pfam PPR repeat 624 648 IPR002885 -
Amo10g2532 956 Pfam PPR repeat 140 165 IPR002885 -
Amo10g2532 956 Pfam PPR repeat 347 373 IPR002885 -
Amo10g2532 956 Pfam PPR repeat 213 238 IPR002885 -
Amo10g2532 956 Pfam PPR repeat 723 747 IPR002885 -
Amo10g2532 956 Pfam PPR repeat 241 267 IPR002885 -
Amo10g2532 956 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 103 294 - -
Amo10g2532 956 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 396 944 - -
Amo10g2532 956 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 296 392 - -
Amo10g2532 956 Gene3D Tetratricopeptide repeat domain 398 496 IPR011990 GO:0005515
Amo10g2532 956 Gene3D Tetratricopeptide repeat domain 621 840 IPR011990 GO:0005515
Amo10g2532 956 Gene3D Tetratricopeptide repeat domain 497 613 IPR011990 GO:0005515
Amo10g2532 956 Pfam PPR repeat family 447 494 IPR002885 -
Amo10g2532 956 Pfam PPR repeat family 649 695 IPR002885 -
Amo10g2532 956 Gene3D Tetratricopeptide repeat domain 40 189 IPR011990 GO:0005515
Amo10g2532 956 Gene3D Tetratricopeptide repeat domain 190 299 IPR011990 GO:0005515
Amo10g2532 956 Gene3D Tetratricopeptide repeat domain 300 397 IPR011990 GO:0005515
Amo10g2532 956 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Amo10g2532 956 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Amo10g2532 956 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Amo10g2532 956 Pfam E motif 766 828 IPR046848 -
Amo10g2532 956 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 172 IPR002885 -
Amo10g2532 956 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 649 683 IPR002885 -
Amo10g2532 956 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 296 392 - -
Amo10g2532 956 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 103 294 - -
Amo10g2532 956 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 396 944 - -
Amo10g2532 956 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Amo10g2532 956 Pfam DYW family of nucleic acid deaminases 864 956 IPR032867 GO:0008270
Amo10g2532 956 TIGRFAM PPR: pentatricopeptide repeat domain 140 173 IPR002885 -
Amo10g2532 956 TIGRFAM PPR: pentatricopeptide repeat domain 550 579 IPR002885 -
Amo10g2532 956 TIGRFAM PPR: pentatricopeptide repeat domain 347 381 IPR002885 -
Amo10g2532 956 TIGRFAM PPR: pentatricopeptide repeat domain 450 483 IPR002885 -
Amo10g2532 956 TIGRFAM PPR: pentatricopeptide repeat domain 652 685 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2532 Amo-Chr10 87761698 87764568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2532 122 956 Glycoside Hydrolase AT3G49170 33.412 4.07e-156 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2532 - - gmx:100779971 1348.57