Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2415 ATGGATTTCTATGGCAACAAAAAATCTCTCCTTTCCCTAATGACTGATACCGAAAATAACAACGAATTCCAACAACAAAAATCTCCAAACATCAATCACCTTCGTATTCAAACCCATAGAGACATCACCATAACACGACAACCACCACAAGATGATGTTAACAATGTTCAATTTAGTTCTCCAAGAACCTCAACATCTGAAAACACAACTACAACTATGTTTCCTATGATGTCTTCGCCGACACACCCGTGTCCGGACTCACCATGGACACTTTCCTCCATTTCACCGCCGCCGAACCCTTCGCCTTCCTTGCTCTATCACTGCATAGCCTCCCTCCACCGCCACGAGGGCAACATCTATGCCATCGCGGCTTCTAAGGGATTGGTCTTTACTGGCTCTAACAGCACCAGAATTCGCGTCTGGAAGCAACCCGATTGTATGGACAAAGGGTACCTCAAGGCGAGTTCTGGTGAGGTTAGAGCCATATTGGCTTATAGCAACACACTTTTCTCCACCCACAAGGACCACAAAATCAGGATATGGAACTTCACTGTATCGGACACTTTCAAATCCAAGAAAGTGGGTACGCTACCTAGGAAAAGCTCGTTCCTGTTGTTCCCAAGAGGGAACCAGCAAAATCCAAAGCACAAGGAGAATGTTTCTTGCATGGCTTATTACCATTCGGAGGGGCTATTGTACACTGGGTCACACGATAGAACGGTGAAGGCTTGGAGGGTCTCTGATAGGAAATGCGTTGACTCGTTTCTTGCACATGAAGATAACATAAACTCCATGTTGGTCAACCAAGACGATGGCTGCCTCTTCACTTCATCTTCTGATGGATCAGTCAAGATATGGAGAAGGGTATACACGGAAGACTCGCACACTTTGACAATGACGTTGAAGTTCCAACCTTCACCTGTGAATGCACTTGCTCTAAGCTCCTCCTTCAACCACTGCTTCCTCTATTCAGGTTCCTCCGACGGAATGATCAACTTCTGGGAGAAAGAGAGGCTATGCTACCGGTTCAACCACGGAGGATTCTTGCAGGGCCACCGGTTCGCGGTTCTTTGCTTAGCAACGGTTGGTAATCTTGTATTCAGCGGCTCGGAAGACACCACCATTAGGGTGTGGAGGAGGGAGGAAGGCAGCTGCTACCACGAGTGCTTGGCGGTTCTTGACGGACACCGTGGACCCGTCAGGTGTCTGGCGGCGTGCCTCCAGATGGAAAAGGTTGTTTTGGGTTTCTTGGTTTATAGTGCTAGTTTGGACCAAACATTTAAGGTTTGGAGGATTAAGATTTTGAGTGAAGATAATGATGAAAAGATGTGTTTGGAATATGATGCAACAATAAGTAGCAGTGGTAGGGAAGGGAGGGTTAAAGTTAGGGATTATGATATGAGCCCTGTTTTGTCGCCTTCATGGGTCGAGAAGAAGCTACAAGGTACCTACTTCCACTGA 1461 0.4682 MDFYGNKKSLLSLMTDTENNNEFQQQKSPNINHLRIQTHRDITITRQPPQDDVNNVQFSSPRTSTSENTTTTMFPMMSSPTHPCPDSPWTLSSISPPPNPSPSLLYHCIASLHRHEGNIYAIAASKGLVFTGSNSTRIRVWKQPDCMDKGYLKASSGEVRAILAYSNTLFSTHKDHKIRIWNFTVSDTFKSKKVGTLPRKSSFLLFPRGNQQNPKHKENVSCMAYYHSEGLLYTGSHDRTVKAWRVSDRKCVDSFLAHEDNINSMLVNQDDGCLFTSSSDGSVKIWRRVYTEDSHTLTMTLKFQPSPVNALALSSSFNHCFLYSGSSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCLATVGNLVFSGSEDTTIRVWRREEGSCYHECLAVLDGHRGPVRCLAACLQMEKVVLGFLVYSASLDQTFKVWRIKILSEDNDEKMCLEYDATISSSGREGRVKVRDYDMSPVLSPSWVEKKLQGTYFH* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2415 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 286 IPR001680 GO:0005515
Amo10g2415 486 Gene3D - 344 483 IPR015943 GO:0005515
Amo10g2415 486 Pfam WD domain, G-beta repeat 250 286 IPR001680 GO:0005515
Amo10g2415 486 Pfam WD domain, G-beta repeat 348 378 IPR001680 GO:0005515
Amo10g2415 486 Pfam WD domain, G-beta repeat 299 334 IPR001680 GO:0005515
Amo10g2415 486 Pfam WD domain, G-beta repeat 216 244 IPR001680 GO:0005515
Amo10g2415 486 Pfam WD domain, G-beta repeat 388 430 IPR001680 GO:0005515
Amo10g2415 486 PANTHER OS01G0232200 PROTEIN 1 479 - -
Amo10g2415 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 254 IPR001680 GO:0005515
Amo10g2415 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 378 - -
Amo10g2415 486 Gene3D - 209 343 IPR015943 GO:0005515
Amo10g2415 486 Gene3D - 43 204 IPR015943 GO:0005515
Amo10g2415 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 286 - -
Amo10g2415 486 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 479 IPR045182 -
Amo10g2415 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 388 IPR001680 GO:0005515
Amo10g2415 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 213 247 - -
Amo10g2415 486 SUPERFAMILY WD40 repeat-like 107 432 IPR036322 GO:0005515
Amo10g2415 486 MobiDBLite consensus disorder prediction 46 70 - -
Amo10g2415 486 SMART WD40_4 294 335 IPR001680 GO:0005515
Amo10g2415 486 SMART WD40_4 145 182 IPR001680 GO:0005515
Amo10g2415 486 SMART WD40_4 207 245 IPR001680 GO:0005515
Amo10g2415 486 SMART WD40_4 386 431 IPR001680 GO:0005515
Amo10g2415 486 SMART WD40_4 105 142 IPR001680 GO:0005515
Amo10g2415 486 SMART WD40_4 342 379 IPR001680 GO:0005515
Amo10g2415 486 SMART WD40_4 248 287 IPR001680 GO:0005515
Amo10g2415 486 CDD WD40 108 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2415 Amo-Chr10 84626278 84629819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2415 211 433 Miscellaneous Gene Families AT5G08390 23.913 2.58e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2415 - - adu:107470716 982.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2415 10 84626278 84629819 Amo20g2905 20 130525117 130528719 hybridization