Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2312 ATGTCCAAGAATGTCATTGATGCTTGTGTTCAACTTAGAGTGAAGCGGCTTGTTTACACCAGCTCATCCAGTGTTGTATTTGACGGCGTTCATGGAATTCATAATGGAAAGGAATCAATGCCCTATCCACCTAAGCATAATGATCATTATTCTGCTACCAAAGCTCAGGGTGAGGCATTGGTTTTGAAGGCTAATGGAACTAGTGGGATCCTGACCTGCTCGCTACGTCCTAGTAGCATTTTCGGGCCTGGTGATAGACTGATGGTGCCTTCGTCAGTTGATGCTGCCAAGGCAGGGAAAACTAAGTTCATTATTGGTGATGGCAATAACATGTATGATTTCACTTATGTTGGAAATGTGGCTCATTCCCATTTATGTGCTGACCGAGCTCTAGCTTCAGAAGGGGAAGTTTCAAAAAAAGCTGCAGGAGAGGCATATTTCATAACAAATATGGAACCTATAAAATTTTGGGAATTCATGTCACTTATTCTAGAAGGTCTTGGATATGAAAGGTATACTGTGATTTGCAGGCCAAGAATAAAGATCCCTGCCTTTGTTCTCATGCCAATTGCACTATTGGTGGAGTATACATATAAGCTGCTAGGTCCATATGGTATGAAGGTGCCTCAGTTAACACCTTCAAGAGAGGGTTTGCGTAGGACAATTGATTCATTTTCACACTTGAGGGCTGAAAATCAACTCAAGCCCAAAAGAGAAGGTCCCTCGAAAGCTTCAGTATATCTTGGGAGTGGAAGAGTCTTGATTGCAATATACTTAAGCTTCATTGAACCCGGGAATACTTTCATTACTGCTCTTTCAAAGCTTCTGTTGTTCGTATCGATCTTTTTATTCATTCATGGGATTCTACCGGCAAAAGTATTGGGGTACACTGTTCAGAAAATGCCCAAATCCTGGTTTCACTTATCAGAAGACATGTCACATCAACTTGCCGTCTCTGTGGTATCAGTATGGAATATTCCTATGAATGTTTTGAAATCCCTTGCACAAGGGAACGAGTGGATGCTATTCTTTAAGGTTGTTTTCTCTTTGCTCCTTCTTAGCTTCTTTGGTGCATTTTCACTTCAGAACTTATATAAGATAGGACTTACCACTGCATTTATTGCTTTCTACATTTATGAAAAGAAGGAGGAAGAAATTGATGACTTATTCATAAAAGCACTTTCTTTTGGATGCAAATTGAAATCTGATGCCATAAGGAAGTTCCTTCCTTCTAAGAAGAGTGAGTGA 1248 0.4022 MSKNVIDACVQLRVKRLVYTSSSSVVFDGVHGIHNGKESMPYPPKHNDHYSATKAQGEALVLKANGTSGILTCSLRPSSIFGPGDRLMVPSSVDAAKAGKTKFIIGDGNNMYDFTYVGNVAHSHLCADRALASEGEVSKKAAGEAYFITNMEPIKFWEFMSLILEGLGYERYTVICRPRIKIPAFVLMPIALLVEYTYKLLGPYGMKVPQLTPSREGLRRTIDSFSHLRAENQLKPKREGPSKASVYLGSGRVLIAIYLSFIEPGNTFITALSKLLLFVSIFLFIHGILPAKVLGYTVQKMPKSWFHLSEDMSHQLAVSVVSVWNIPMNVLKSLAQGNEWMLFFKVVFSLLLLSFFGAFSLQNLYKIGLTTAFIAFYIYEKKEEEIDDLFIKALSFGCKLKSDAIRKFLPSKKSE* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2312 415 Gene3D - 1 246 - -
Amo10g2312 415 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 3 176 IPR002225 GO:0003854|GO:0006694|GO:0016616
Amo10g2312 415 Pfam Reticulon 253 391 IPR003388 -
Amo10g2312 415 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 225 IPR036291 -
Amo10g2312 415 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 4 225 - -
Amo10g2312 415 PANTHER 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1 4 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2312 Amo-Chr10 80956173 80964722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2312 4 240 Lipid Metabolism Gene Families AT2G33630 31.128 1.59e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2312 K23558 - gmx:100816854 601.282