Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2127 ATGGATTCAAGTTCGAGCCAGGAATTCGATTACCTGTTTAAGCTGTTGATGATTGGGGACTCCGGCGTCGGCAAGAGCAGCCTTCTTCTCTGTTTCACCTCCGATACCTTCGACGATCTCGCCCCCACCATTGGTGTTGATTTTAAGGTCAAGTATGTAATGATGGATGGTAAAAAGCTCAAGCTTGCTATCTGGGATACAGCTGGTCAGGAGAGATTCAGAACATTGACAAGCTCGTACTACCGAGGGGCACAAGGGATCATTATGGTTTATGATGTAACTCGGCGAGAAACATTTACAAACCTCTCTGAAGTGTGGGCAAAGGAAATAGAACTTTATTCAACAAACCAAGATTGCATCAAGATGCTTGTAGGAAACAAAGTGGATAAGGAGAGTGATAGAGTTGTGACAAAGAAAGAGGGAATTGACTTTGCAAGGGAATACGGTTGCCTATTTATTGAATGCAGTGCTAAAACTCGAGTAAATGTACAACAATGCTTTGAAGAGCTTGTTTTGAAGATTTTGGATACACCTAGCCTCTTAGCCGAGGGTTCTAAGGGGATTAAGAAGAACATTTTTAAGGACAAGCCACCGCAATCTGATGCAGCCACAAGTGGTTGTTGCTGA 627 0.4322 MDSSSSQEFDYLFKLLMIGDSGVGKSSLLLCFTSDTFDDLAPTIGVDFKVKYVMMDGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIELYSTNQDCIKMLVGNKVDKESDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGIKKNIFKDKPPQSDAATSGCC* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2127 208 ProSiteProfiles small GTPase Rab1 family profile. 8 208 - -
Amo10g2127 208 SMART ran_sub_2 18 204 - -
Amo10g2127 208 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Amo10g2127 208 Pfam Ras family 14 175 IPR001806 GO:0003924|GO:0005525
Amo10g2127 208 ProSiteProfiles small GTPase Rho family profile. 6 175 - -
Amo10g2127 208 SMART ras_sub_4 10 177 - -
Amo10g2127 208 SMART arf_sub_2 1 178 - -
Amo10g2127 208 SMART rab_sub_5 13 177 - -
Amo10g2127 208 ProSiteProfiles small GTPase Ras family profile. 4 208 IPR001806 GO:0003924|GO:0005525
Amo10g2127 208 PRINTS Transforming protein P21 ras signature 13 34 - -
Amo10g2127 208 PRINTS Transforming protein P21 ras signature 35 51 - -
Amo10g2127 208 PRINTS Transforming protein P21 ras signature 53 75 - -
Amo10g2127 208 PRINTS Transforming protein P21 ras signature 117 130 - -
Amo10g2127 208 PRINTS Transforming protein P21 ras signature 152 174 - -
Amo10g2127 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 181 IPR027417 -
Amo10g2127 208 CDD Rab18 13 174 - -
Amo10g2127 208 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 208 - -
Amo10g2127 208 Gene3D - 5 208 IPR027417 -
Amo10g2127 208 PANTHER DRAB5-RELATED 1 208 - -
Amo10g2127 208 SMART rho_sub_3 15 177 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2127 Amo-Chr10 75499655 75502238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2127 14 167 EF-hand Containing Proteins AT5G27540 27.329 7.02e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2127 K07910 - gmx:100787603 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2127 10 75499655 75502238 Amo20g2592 20 121373359 121375964 hybridization