Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2097 ATGAGTATGAATTTATGTTCTTCCTTTTTCTTCATGTTCTTCATTGCGACCCCTTTTACCTGCATCATCCATGTTTGCTCAGCAGATTGTGATAATCTACAAGATACATGCCCGACATCTTTGCCAGAAAAGGAAACCATATTCATCAATGGKCTACCCTGCAAGAGTAAAGACAACAACACTGCTCAGGATTTCAAGACCGCAGAACTGACAAGGGCTGGTCCTAGAGACAATTTCTTCGGCTCCTCAATGAACATAGTTAGTGCTTCCAAGTTCCCCGGCCTTAACACGWTTGGCATCTCGATTAGTAGAATTGACATTGAAGTGGACGGGATGGTAAACCTRCACAATCATCCYAGAGCCACCGAGATGATCTATGTCAACCAAGGGGTGCTGGCAGCAGCATTTCTTGATACGCAAAACCAGRTTTTCCAAAAGTCTCTGAGAGCAGGCGATAATCCAGGGTTGGGCTCCCTCAGTGCTTCTACACCTTCTGAGACCACATTGGAGTCGGTAGAGAACCTAAAGCGGAAACTCATAACCTCATTTTCTGACTTAGAACTTCATCATGGCATTACTGATTTGGCCTCACAAATACTAGAGATCATATACAGTTAG 618 0.4369 MSMNLCSSFFFMFFIATPFTCIIHVCSADCDNLQDTCPTSLPEKETIFINGLPCKSKDNNTAQDFKTAELTRAGPRDNFFGSSMNIVSASKFPGLNTXGISISRIDIEVDGMVNLHNHPRATEMIYVNQGVLAAAFLDTQNQXFQKSLRAGDNPGLGSLSASTPSETTLESVENLKRKLITSFSDLELHHGITDLASQILEIIYS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2097 205 SUPERFAMILY RmlC-like cupins 29 152 IPR011051 -
Amo10g2097 205 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 21 152 - -
Amo10g2097 205 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 21 152 - -
Amo10g2097 205 Pfam Cupin 72 152 IPR006045 -
Amo10g2097 205 Gene3D Jelly Rolls 28 153 IPR014710 -
Amo10g2097 205 ProSitePatterns Germin family signature. 111 124 IPR019780 GO:0030145
Amo10g2097 205 SMART Cupin_1_3 68 198 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2097 Amo-Chr10 74988079 74988783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2097 24 152 Miscellaneous Gene Families AT3G05930 39.231 4.52e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2097 - - mtr:MTR_3g096330 204.912