Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1853 ATGGCGAAGCAGAAACAGAGCAGCACTTATTTGTTTTACTCGGCAATTCTTCTATTCACCATCTTCTGTGTCTCCTCTGTTTTGGTTTCAGCTAGAGTTCATCCTATCTTGCAGAGCTTTAACCAGAAACCCATTTTCCGATCCAACTTCCACTCCATCTATGATACCTCCAACTATGGCACCTTTCAACTCAGTAATGGCTTGGCCAAAACGCCTCAAATGGGATGGAATAGCTGGAACTTCTTTGCATGCAATATCAATGAGACCGTCATTAAGGAAACCGCTGATGCACTGATATCGACGGGATTAGCAGATTTGGGTTATGTGTACGTCAACATAGATGATTGCTGGTCTTCTGTGACAAGAAATTTGAAGGGTCAACTGGTACCTGACGAAAAAACATTCCCATCAGGAATCAAAGCTCTTGCAGATTATGTACATGAAAAGGGACTGAAGCTTGGTATATATTCCGATGCTGGGGCGTTTACTTGTCAAGTCCGACCAGGATCGATTTTCCATGAAAAGGATGATGCAGCTTTGTTTGCCTCTTGGGGTATAGATTACCTGAAATATGACAATTGTTACAATCTGGGCATCCCACCCAAAAAAAGATATCCACCAATGCGTGATGCTCTCAATGCTACTGGACGTACAATTTTCTATTCACTTTGTGAATGGGGTGTTGATGACCCTGCCTTATGGGCTGGCACTGTTGGTAACAGTTGGCGCACAACTGAAGACATCAATGATACTTGGGCAAGTATGTCAAACATTGCTGATCTCAATGACAAGTGGGCCGCATATGCGGGTCCTGGCGGATGGAATGACCCAGATATGTTGGAAGTTGGAAATGGCGGCATGACTTACCAAGAATACCGTGCTCATTTCAGCATCTGGGCTTTAATGAAGGCTCCTCTATTGATTGGTTGTGATGTAAGAAATATGACTATTGAGACAATTGAGATTTTGACCAACAAAGAAGTCATTGACATAAATCAAGATCCACTTGGTGTCCAAGGAAGGAAAGTTTATGTTTCTGGAAAAGATGGTTGCAATCAGGTTTGGGCTGGTCCTTTATCAGGAGACCGGTTGGCAGTGGCACTCTGGAACCGGTGCTCAAATGCAACTACGATAACTGCTTCATGGAATACGATTGGACTGGAATCTGGAATTCGAGTATCTGTAAGGGATTTATGGCAGCACAAGACACTAACATCAGATGCAGTGTCATCATTCAGTGCTCATGTTGATGCTCATGATTGTCATTTTTACATTTTCACTCCTTCTCCTTCAGTGTCTCACTCTGTAGAGTAG 1314 0.4315 MAKQKQSSTYLFYSAILLFTIFCVSSVLVSARVHPILQSFNQKPIFRSNFHSIYDTSNYGTFQLSNGLAKTPQMGWNSWNFFACNINETVIKETADALISTGLADLGYVYVNIDDCWSSVTRNLKGQLVPDEKTFPSGIKALADYVHEKGLKLGIYSDAGAFTCQVRPGSIFHEKDDAALFASWGIDYLKYDNCYNLGIPPKKRYPPMRDALNATGRTIFYSLCEWGVDDPALWAGTVGNSWRTTEDINDTWASMSNIADLNDKWAAYAGPGGWNDPDMLEVGNGGMTYQEYRAHFSIWALMKAPLLIGCDVRNMTIETIEILTNKEVIDINQDPLGVQGRKVYVSGKDGCNQVWAGPLSGDRLAVALWNRCSNATTITASWNTIGLESGIRVSVRDLWQHKTLTSDAVSSFSAHVDAHDCHFYIFTPSPSVSHSVE* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1853 437 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 48 427 IPR002241 GO:0004553|GO:0005975
Amo10g1853 437 SUPERFAMILY (Trans)glycosidases 64 335 IPR017853 -
Amo10g1853 437 Gene3D Aldolase class I 64 336 IPR013785 -
Amo10g1853 437 PRINTS Glycosyl hydrolase family 27 signature 66 85 IPR002241 GO:0004553|GO:0005975
Amo10g1853 437 PRINTS Glycosyl hydrolase family 27 signature 102 117 IPR002241 GO:0004553|GO:0005975
Amo10g1853 437 PRINTS Glycosyl hydrolase family 27 signature 143 164 IPR002241 GO:0004553|GO:0005975
Amo10g1853 437 PRINTS Glycosyl hydrolase family 27 signature 177 194 IPR002241 GO:0004553|GO:0005975
Amo10g1853 437 PRINTS Glycosyl hydrolase family 27 signature 204 222 IPR002241 GO:0004553|GO:0005975
Amo10g1853 437 PRINTS Glycosyl hydrolase family 27 signature 269 288 IPR002241 GO:0004553|GO:0005975
Amo10g1853 437 PRINTS Glycosyl hydrolase family 27 signature 290 311 IPR002241 GO:0004553|GO:0005975
Amo10g1853 437 CDD GH27 72 334 IPR002241 GO:0004553|GO:0005975
Amo10g1853 437 Pfam Alpha galactosidase C-terminal beta sandwich domain 350 425 IPR041233 -
Amo10g1853 437 PANTHER ALPHA-GALACTOSIDASE 3 48 427 - -
Amo10g1853 437 SUPERFAMILY Glycosyl hydrolase domain 347 427 - -
Amo10g1853 437 Gene3D - 337 429 IPR013780 -
Amo10g1853 437 Pfam Alpha galactosidase A 71 334 IPR002241 GO:0004553|GO:0005975
Amo10g1853 437 ProSitePatterns Alpha-galactosidase signature. 107 123 IPR000111 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1853 Amo-Chr10 66235978 66242128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1853 1 435 Glycoside Hydrolase AT3G56310 69.725 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1853 K07407 - gmx:100784072 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1853 10 66235978 66242128 Amo20g2357 20 110217414 110223705 hybridization