Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0711 ATGAGAGACACTTCACCAGAAAGCAGAGGTTGTGGTTTGCTATCATCATTGCTTCGCAGGCGCGGCTCATCTAGGAGCAAAACTGAAAGATATTCTGGTAATGACGATGCTCATAATCATGGGAAGCAACCATCAAAAGCCAAAGATTCAAAACGGCCCCGGAGTGATGTCTCTGATGATGCCCGAAGATCTGCTTCTTCTGCATCAAGCAATTCCAACACTCCCCAGAGCCAAAAGCATGTAGTTGTAAGTGTAAACCAAAACCACCAAAGGAAACAACAACAACATGATGAGGCAGCAGCAGCATCAATGGCAGTGTGTTCGTCATCTAGGTCGTCAAAGGTGTCACCTGTACAAGGATATGTCAATCAAGGAAGAAAGGTTCCAAAAGATGCCGTTGGAATATCCGGTGAGCTTGATAGCATGTTAAACGATTACCAGAAGCCGAAGGGAAGCAACAAGCTTGTTCGAGCTTCTAGCAATGTGATGATATATGGTAACTTAGGTAACCTTGGACAAGGAGGAGGAGGAACAAATTATCCTAGTTCAAACATTCCAATGGATAAAGTGGAAAATGGTGGTGGTAGTAACAATAATAGGAATAAAAAGGTTACTAGGAATAGTAAAGAAGAATCAGGTTCACTTTGTAGGGCTGTGTCTACTAGAATGGACCCTGAACAGTTGAAGATAATGGGGAATGAGGATTATAAGAATGGGAACTTTGCTGAGGCATTGGCTCTGTATGATGCAGCAATTGCAATTGATCCTAATAAGGCTGCTTATAGAAGCAATAAAAGTGCAGCATTAACAGCTCTTGGAAGGCTTTTGGAGGCTGTGTTTGAATGTAGAGAAGCCATTCGGATTGATCAGCATTACCAAAGAGCTCATCAACGATTGGGAAACTTGTACTTTAGACTAGGAGACCCAGAAAAGGCATTGTATCATTATAAACAAGCAGGACCAGAGGCTGATCCTGATGAGATTGCTAAAGTGAAGATTCTTCAGGTTCATCTAAACAAGTGCACGGAGGCTCGCAGGGTGGGTGATTGCAACACACTAATCACTGAAACTAACAAGGTTATATCATCTGGTGCAGATTCTGCTCAACAGATATTTGCATTACAAGCAGAAGCACTCTTAAAGCTTCGTAGACATCAAGATGCAGAAAAAATAATGTCAAAGTGCCCGAAATTTGATGTTGATGAGTGTACTAGGTTCTTTGGACCTATATGCAATGCAAATTTGTTGGTGACACATGCCCAAGTCGATATAGCAGCTGGGAGATTTGAAGATGCTTTAGAAGCAGCTCAGAAAGCAGTTAGTTTGGATCCCAATAATAGGGAGGCCAATATGGTTATGAGAAAGGCTCGAGATGTCAGCGCTGCTCGATCAAAGGGAAACGAGCTTTTCAAGGCATCAAGGTTCTCTGAGGCCTGTGCCGCATATGGAGAGGGACTTGAACGTGATCCATATAACTCTGTTTTACTATGCAACAGTGCTGCATGCAGATCAAAACTAGGCCAATATGAGAAAGCTGCGGAAGATTGCACTCTTGCACTTAACTTGCGCCCATCTTATGCCAAGGCTAGGTTGAGAAGAGCTGATTGCAATGCCAAGTTGGAAAGGTGGGAAGCTTCCATACAAGACTATGAAATTTTGTTAAAAGAGACACCAGATGATGAACAAGTAAAACGGGCATTGCTGGAGGCCCAAGAAAAGCTAAAGACGCAAAGAGGTGGATAA 1743 0.4286 MRDTSPESRGCGLLSSLLRRRGSSRSKTERYSGNDDAHNHGKQPSKAKDSKRPRSDVSDDARRSASSASSNSNTPQSQKHVVVSVNQNHQRKQQQHDEAAAASMAVCSSSRSSKVSPVQGYVNQGRKVPKDAVGISGELDSMLNDYQKPKGSNKLVRASSNVMIYGNLGNLGQGGGGTNYPSSNIPMDKVENGGGSNNNRNKKVTRNSKEESGSLCRAVSTRMDPEQLKIMGNEDYKNGNFAEALALYDAAIAIDPNKAAYRSNKSAALTALGRLLEAVFECREAIRIDQHYQRAHQRLGNLYFRLGDPEKALYHYKQAGPEADPDEIAKVKILQVHLNKCTEARRVGDCNTLITETNKVISSGADSAQQIFALQAEALLKLRRHQDAEKIMSKCPKFDVDECTRFFGPICNANLLVTHAQVDIAAGRFEDALEAAQKAVSLDPNNREANMVMRKARDVSAARSKGNELFKASRFSEACAAYGEGLERDPYNSVLLCNSAACRSKLGQYEKAAEDCTLALNLRPSYAKARLRRADCNAKLERWEASIQDYEILLKETPDDEQVKRALLEAQEKLKTQRGG* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0711 580 PANTHER OS01G0616333 PROTEIN 6 578 - -
Amo10g0711 580 Pfam Tetratricopeptide repeat 294 319 IPR013105 -
Amo10g0711 580 Pfam Tetratricopeptide repeat 420 446 IPR019734 GO:0005515
Amo10g0711 580 SUPERFAMILY TPR-like 225 449 IPR011990 GO:0005515
Amo10g0711 580 MobiDBLite consensus disorder prediction 105 120 - -
Amo10g0711 580 Coils Coil 533 553 - -
Amo10g0711 580 SUPERFAMILY TPR-like 458 575 IPR011990 GO:0005515
Amo10g0711 580 MobiDBLite consensus disorder prediction 1 120 - -
Amo10g0711 580 MobiDBLite consensus disorder prediction 180 202 - -
Amo10g0711 580 MobiDBLite consensus disorder prediction 180 217 - -
Amo10g0711 580 MobiDBLite consensus disorder prediction 62 90 - -
Amo10g0711 580 SMART tpr_5 459 492 IPR019734 GO:0005515
Amo10g0711 580 SMART tpr_5 293 326 IPR019734 GO:0005515
Amo10g0711 580 SMART tpr_5 493 526 IPR019734 GO:0005515
Amo10g0711 580 SMART tpr_5 527 560 IPR019734 GO:0005515
Amo10g0711 580 SMART tpr_5 413 446 IPR019734 GO:0005515
Amo10g0711 580 SMART tpr_5 225 258 IPR019734 GO:0005515
Amo10g0711 580 SMART tpr_5 259 292 IPR019734 GO:0005515
Amo10g0711 580 Pfam Tetratricopeptide repeat 232 289 - -
Amo10g0711 580 Pfam Tetratricopeptide repeat 505 560 - -
Amo10g0711 580 MobiDBLite consensus disorder prediction 22 61 - -
Amo10g0711 580 ProSiteProfiles TPR repeat profile. 413 446 IPR019734 GO:0005515
Amo10g0711 580 Gene3D Tetratricopeptide repeat domain 223 578 IPR011990 GO:0005515
Amo10g0711 580 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Amo10g0711 580 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 6 578 IPR044534 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0711 Amo-Chr10 9249778 9253492 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0711 - - lang:109326248 684.485