Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0688 ATGGGTGCTGCGGGTTCCAAGCTCGAGAAGGCTCTCGGTGACCAATTCCCTGAAGGTGAACGTTACTTCGGCCTCGAGAATTTCGGCAACACTTGTTACTGCAACAGCGTTTTGCAGGCACTGTACTTCTGTGTCCCATTTCGTGAACAATTGTTAGATTATTATGCAAATAACAAAAGCATGGCGGATGCAGAGGAAAATCTTTTAACTTGCCTAGCTGACTTATTTTCACAGATAAGTTCCCAAAAGAAGAAAACTGGTGTGATTGCTCCCAAAAGATTTGTACAGAGGTTGAAAAAACAAAATGAACTCTTCCGCAGCTATATGCACCAGGATGCCCATGAATTCTTGAACTTTTTGTTGAATGAACTTGTCGACATTTTGGAGAAAGAGGCCCAGTCTGCAAAAGATGATCAAGATCCATTACCGCCTTCTGAAAAGGTTGCAAATGGGCCTATAGCTGGTCCAGTTAATGGCACCAAGAAAGAGCCTTTAGTTACTTGGGTTCATAAAAACTTTCAGGGAATACTCACCAATGAGACAAGGTGCCTACAATGCGAAACAGTGACTGCTAGGGATGAAACCTTTTTTGACCTGAGCCTCGACATTGAACAGAACAGTTCAATTACAAGCTGTTTGAAAAACTTCAGTTCAACAGAGACATTAAATGCCGAAGATAAATTTTTTTGTGACAAATGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAAACCACCTCAAATCTTGGTCATCCATCTAAAACGGTTTAAGTATATTGAACAGCTTGGCCGCTACAAGAAGTTATCTTACCGGGTTGTCTTCCCCCTTGAGCTGAAGCTGAGTGATACCGTTGAAGATGCAGACATTGAGTATTCTCTGTTTGCAGTAGTTGTCCATGTTGGTAGTGGCCCTAACCATGGCCATTATGTTAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGACGACGAAAATGTTGAGATGATAGATGAGTCAGCCGTTCAGACATTCTTTGGGTCATCACAGGAATATTCCAGTAATACAGACCATGGTTACATTTTGTTCTACGAGAGCATAGCCTCTGGTCACAAGAGTTAG 1110 0.4189 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYANNKSMADAEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQSAKDDQDPLPPSEKVANGPIAGPVNGTKKEPLVTWVHKNFQGILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPQILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSDTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEYSSNTDHGYILFYESIASGHKS* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0688 369 Pfam Ubiquitin carboxyl-terminal hydrolase 23 360 IPR001394 GO:0004843|GO:0016579
Amo10g0688 369 MobiDBLite consensus disorder prediction 132 159 - -
Amo10g0688 369 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 363 IPR028889 -
Amo10g0688 369 CDD Peptidase_C19G 24 361 - -
Amo10g0688 369 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 1 366 - -
Amo10g0688 369 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 366 - -
Amo10g0688 369 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 294 312 IPR018200 GO:0004843|GO:0006511
Amo10g0688 369 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Amo10g0688 369 SUPERFAMILY Cysteine proteinases 21 361 IPR038765 -
Amo10g0688 369 Gene3D Cysteine proteinases 5 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0688 Amo-Chr10 8831945 8836860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0688 24 334 Miscellaneous Gene Families AT4G31670 26.646 2.08e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0688 K11842 - gmx:100787737 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1127 20 21570443 21575451 Amo10g0688 10 8831945 8836860 hybridization