Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo10g0544 | ATGGAAATGATGCCATACCAGCTTTCCAGGTTACCTTACCATGATTCTCTCAAACTTCTGGAGGCTGATATACAGCATGCCAATTCTTTGGCTGCAGCAATTCCAGGAACAGAAGGTGGAACTGTTCTTCAAATGAAATTGGTTTATAATCACTTGGCTCCTTTGGTTCTCTTGTTTCTACAGTGGATGGATTGTTCCTGTGCTAGCTTTCTACATAGATATCTCAATCTCTTCCACATAGTTATATACAAGGTACACAATGATGGTAGAAACATGTCTAGTCATGGAAGGAAAGCTACCATAGGGGACTTTTATGCTGTTATATTGCCATCTCTCCAGCGGCTTCACGGTAGCTTGGAGAAGTTGGAGACTTCGAAAGAAGGCCAATCATTGAGCATGGAACATTCAAGTTATGGCAAGAAGATGATTGTTGAAGGTGATGGGAAACTAACCAATGTTGACTTGCAAAGAGAGGATGAATGTGATATTTGCTTAGAGCCTTGCACCAAAATGGTCCTGCCTAATTGTTGCCATGCCATGTGTATCCGGTGCTACCGCAAGTGGAACACCCGGTCGCAGTCTTGCCCTTTTTGCCGCGGCAGCTTGAGGAGGGTTAACTCTGAGGATCTTTGGGTGCTAACTTGCAATGAAGATGTTGTTGATGCTGAAACAGTTTCTAAGGAAGACTTGTGGCGTTTCTACCTTTATATCAATAAGCTACCAAAACATCACCCGGAAGCACTTTTTGTAATGTACTATGAATATCTCATTTGA | 774 | 0.4251 | MEMMPYQLSRLPYHDSLKLLEADIQHANSLAAAIPGTEGGTVLQMKLVYNHLAPLVLLFLQWMDCSCASFLHRYLNLFHIVIYKVHNDGRNMSSHGRKATIGDFYAVILPSLQRLHGSLEKLETSKEGQSLSMEHSSYGKKMIVEGDGKLTNVDLQREDECDICLEPCTKMVLPNCCHAMCIRCYRKWNTRSQSCPFCRGSLRRVNSEDLWVLTCNEDVVDAETVSKEDLWRFYLYINKLPKHHPEALFVMYYEYLI* | 258 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo10g0544 | 257 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 6 | 257 | - | - | |
| Amo10g0544 | 257 | Pfam | Ring finger domain | 159 | 199 | IPR001841 | - | |
| Amo10g0544 | 257 | SMART | ring_2 | 161 | 198 | IPR001841 | - | |
| Amo10g0544 | 257 | SUPERFAMILY | RING/U-box | 152 | 203 | - | - | |
| Amo10g0544 | 257 | ProSitePatterns | Zinc finger RING-type signature. | 176 | 185 | IPR017907 | - | |
| Amo10g0544 | 257 | ProSiteProfiles | Zinc finger RING-type profile. | 161 | 199 | IPR001841 | - | |
| Amo10g0544 | 257 | PANTHER | RING FINGER PROTEIN 41, 151 | 6 | 257 | - | - | |
| Amo10g0544 | 257 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 210 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo10g0544 | Amo-Chr10 | 5870312 | 5872477 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo10g0544 | - | - | gmx:100790422 | 441.81 |