Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0502 ATGTGGTTTTCTTTTCCAGCTGAGATCGAGGCATCTGGTGGACAAGCTCTTACATTTGGGGGAGATATTTCCAATGAAGCTCACGTGGAATCCATGATTAAAGCTGCAACCGATGCTTGGGGAACTGTTGATGTATTGATAAACAATGCAGGAACTACTAGAGATGGTTTGTTAATGAGAATGAAGAAATCTCAATGGCAGGAGGTTATTGATCTAAATCTCACAGGGGTTTTTCTTTGCACACAGGCTGCAGCTAAGATTATGATGAAGAAGAAGAAGGGAAGGATAATCAATATTGCATCAGTTGTTGGTCTGGTTGGCAATGTTGGACAAGCCAATTATAGTGCTGCAAAAGCCGGAGTAATTGGCTTAACAAAAACTGTTGCAAAGGAGTATTCTAGCAGAAGCATCACTGTTAATGCAGTTGCCCCAGGGTTTATTGCATCTGATATGACTGCAAAGCTAGGAGAAGACATTGAGAAAAAGATTTTGGAGACAATCCCATTAGGGCGATATGGTCAACCAGAAGAAGTTGCTGGGCTGGTGGAATTTTTGGCTCTTAATCCTGCTGCTAGTTACATCACTGGGCAGGTGTTCACCATTGATGGAGGTATGGTGATGTAA 624 0.4215 MWFSFPAEIEASGGQALTFGGDISNEAHVESMIKAATDAWGTVDVLINNAGTTRDGLLMRMKKSQWQEVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYSSRSITVNAVAPGFIASDMTAKLGEDIEKKILETIPLGRYGQPEEVAGLVEFLALNPAASYITGQVFTIDGGMVM* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0502 207 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 207 IPR036291 -
Amo10g0502 207 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 101 129 IPR020904 GO:0016491
Amo10g0502 207 Gene3D - 4 207 - -
Amo10g0502 207 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 7 207 - -
Amo10g0502 207 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 7 207 - -
Amo10g0502 207 Pfam Enoyl-(Acyl carrier protein) reductase 8 205 - -
Amo10g0502 207 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 41 52 IPR002347 -
Amo10g0502 207 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 102 IPR002347 -
Amo10g0502 207 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 114 133 IPR002347 -
Amo10g0502 207 PRINTS Glucose/ribitol dehydrogenase family signature 41 52 IPR002347 -
Amo10g0502 207 PRINTS Glucose/ribitol dehydrogenase family signature 88 104 IPR002347 -
Amo10g0502 207 PRINTS Glucose/ribitol dehydrogenase family signature 135 152 IPR002347 -
Amo10g0502 207 PRINTS Glucose/ribitol dehydrogenase family signature 168 188 IPR002347 -
Amo10g0502 207 PRINTS Glucose/ribitol dehydrogenase family signature 114 133 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0502 Amo-Chr10 5037170 5038900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0502 8 207 Acyl Lipid Metabolism Gene Families AT1G24360 74.000 6.40e-109 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0502 K00059 - gmx:100809809 354.755