Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0484 ATGAGAAATGAATTGTTTACAATTTACATGGCTTGGACTTTGATTCATCAATCACGCGTTACTTCCAGTGCTCCATTATCAAAGCTCTTCCACAACAATTCAACCTTTCTTTTTTCTCTGTATTTCGTTGAGGACTTTTATCGAACACTTAGAGAAATGAAACTGAGTCCAAGAGAGATAGAGAAGCTAGAACTGCACAATGCTGGATTCCTTGCACAGAAACGCCTTGCTCGTGGTTTAAGACTCAATTATACCGAAGCTATTGCTCTTATAGCAACACAGATTCTGGAATTTGTTCGCGATGGTGAGAAGACTGTGGCAGAACTAATGTGCATTGGGAGAGAACTCTTAGGAAGGAGACAAGTTCTTCCTTCTGTTCCACATCTCTTGGATGCTGTTCAGGTTGAAGCCACTTTTCGTGATGGGACTAAGTTAATCACTGTTCATGACCCAGTTGCTTGCGAGAATGGAAACCTTGAGAAAGCATTGTTTGGTTCTTTTCTTCCAGTACCTTCACTTGACAAGTTTCCCGATAATGAAGAAGATGATAGAATTCCAGGCGAAATAATATGTAGAGGTGGAAGCCTAGTTCTTAACCCTGGAAGGAAGGCTGTACTTCTCAAAGTTGTCAACAAGGGAGACAGRCCAATTCAGGTTGGCAGTCACTACCATTTTATTGAAGTAAATCCCTACTTAACCTTTGATAGAAAGAAAGCATATGGCATGCGCCTCAATATAGCTGCAGGGACTGCAACACGCTTTGAGCCCGGGGAATGTAAAAGTGTTGTACTTGTAAGCATTGGAGGTAACCAARTCATCAGAGGAGGTAATAACATTGCYGATGGGCCAGTTACTGTTTCCAATTGTGTAGCAGCCATGGAGGCTGTGAAGACACGACAATTCGGGCATATGGAAGAGGAAAATGCAAGGGAAGGTATTACTGGGGAAGATGATTCACTTACTACGGAAATTCCTCTAGAGGAATATGCTAACAAGTATGGCCCTACTACTGGTGACAAAATCCGTCTTGGTGATACTGACTTGTTTGCGGAAATTGAAAATGATTTTACTGCCTATGGTGATGAATGTGTTTTCGGAGGGGGGAAAGTCATAAGAGATGGAATGGGTCAGTCATGCGGCCATCCATCTGCTCACTGCTTGGATACTGTTATAACAAATGCTATGATAATCGATTATACTGGAATTATCAAGGCAGATATTGGTATCAAAGATGGCCGAATCATCTTGATTGGAAAAACAGGAAATCCAGACATCATGAATGGAATACTTCCAAATAATATGATCATTGGGGCTAACACTGAAGCTATTGCTGGAGAGGGTTTGATTGTAACAGCTGGGGCCGTAGATTGTCATGTGCATTTTATATGCCCTCAATTAGCATATGAAGCCATATCAAGTGGTATCACTACATTAGTTGGAGGAGGAACAGGACCAGCTGATGGAACACGTGCTACTACTTGTACGCCGGCTCCAATTCAGATGAAAATGATGCTGCAATCAACGGATGACCTGCCTCTAAACTTTGGTTTCACAGGCAAAGGGAACAGTGCTAAGCCTGAGGACCTACATGACATAATCAGGGCAGGAGCTATGGGACTGAAGCTGCATGAGGATTGGGGAACTACACCTGCTGCAATAGATAGTTGTTTAACCATTGCGGAACAATATGATATCCAGGCACATCTCACTTATTATATTCACTTATTTACTATTGTTAATATACATACTGACACGTTGAATGAATCTGGATTTGTGGAACATACAATTGATGCATTTAAAGGAAGAACTATTCATACTTATCACAGTGAAGGTGCAGGCGGTGGCCATGCTCCTGATATCATCAAAGTATGTGGTGTGAAGAATGTTTTGCCCTCATCAACAAACCCCACACGCCCCTATACGTCTAATACCATAGATGAGCATCTTGACATGTTGATGGTATGTCATCATCTYGATAAGAATATTCCAGAGGATGTAGCTTTTGCCGAATCAAGGATCAGAGCCGAAACAATTGCTGCTGAAGATATTTTGCATGATATGGGGGCAATTAGCATAATATCTTCTGATTCACAGGCTATGGGTCGAATTGGCGAGGTTATTAGTAGAACATGGCAAACTGCCAGTAAGATGAAGTTGCAAAGAGGACCACTTAAACCTGGTGATTTGGACAATGACAATGACAACTGTCGGATCAAACGATATGTTGCAAAGTACACTATAAATCCAGCTATAGCAAATGGCTTCTCTCAACACATTGGTTCAGTTGAGGTGGGGAAGTTAGCTGATCTTGTGTTATGGAAGCCGTCATTTTTTGGAGCAAAACCAGAAATGGTAATCAAAGGTGGGGAGGTTGCATGGGCTAACATGGGTGACCCAAATGCGAGCATCCCAACCCCCGAACCGGTCATAATGAGGCCTATGTTCGTAGCCTTCGGCAAGGCTAGCAGTGCACACTCTATTGCTTTCGTGAGCAAGGCTGCTTCACGGAACAAAGTAAAAGACTTGTATGGACTTCACAAGAGAGTGGAAGCCGTTGAGAATGTGAGGAGGCTCACCAAACTTGACATGAAACTCAATGACTCTCTCCCGGAGATCACTGTCGATCCAGAATCATACACCGTTACAGCGGACGGAGAGGTTCTAGCCTGCTCTCCGGCCACGACCATTCCCCTTTCTAGAAATTACTTCCTCTTTTGA 2718 0.4279 MRNELFTIYMAWTLIHQSRVTSSAPLSKLFHNNSTFLFSLYFVEDFYRTLREMKLSPREIEKLELHNAGFLAQKRLARGLRLNYTEAIALIATQILEFVRDGEKTVAELMCIGRELLGRRQVLPSVPHLLDAVQVEATFRDGTKLITVHDPVACENGNLEKALFGSFLPVPSLDKFPDNEEDDRIPGEIICRGGSLVLNPGRKAVLLKVVNKGDRPIQVGSHYHFIEVNPYLTFDRKKAYGMRLNIAAGTATRFEPGECKSVVLVSIGGNQXIRGGNNIADGPVTVSNCVAAMEAVKTRQFGHMEEENAREGITGEDDSLTTEIPLEEYANKYGPTTGDKIRLGDTDLFAEIENDFTAYGDECVFGGGKVIRDGMGQSCGHPSAHCLDTVITNAMIIDYTGIIKADIGIKDGRIILIGKTGNPDIMNGILPNNMIIGANTEAIAGEGLIVTAGAVDCHVHFICPQLAYEAISSGITTLVGGGTGPADGTRATTCTPAPIQMKMMLQSTDDLPLNFGFTGKGNSAKPEDLHDIIRAGAMGLKLHEDWGTTPAAIDSCLTIAEQYDIQAHLTYYIHLFTIVNIHTDTLNESGFVEHTIDAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLDKNIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTASKMKLQRGPLKPGDLDNDNDNCRIKRYVAKYTINPAIANGFSQHIGSVEVGKLADLVLWKPSFFGAKPEMVIKGGEVAWANMGDPNASIPTPEPVIMRPMFVAFGKASSAHSIAFVSKAASRNKVKDLYGLHKRVEAVENVRRLTKLDMKLNDSLPEITVDPESYTVTADGEVLACSPATTIPLSRNYFLF* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0484 905 ProSiteProfiles Urease domain profile. 453 905 IPR017951 GO:0006807|GO:0009039|GO:0016151
Amo10g0484 905 SUPERFAMILY Urease, beta-subunit 185 313 IPR036461 -
Amo10g0484 905 SUPERFAMILY Metallo-dependent hydrolases 453 905 IPR032466 -
Amo10g0484 905 CDD Urease_alpha 323 904 IPR005848 GO:0006807|GO:0009039|GO:0016151
Amo10g0484 905 CDD Urease_beta 185 284 IPR002019 GO:0035550|GO:0043419
Amo10g0484 905 PANTHER UREASE 53 905 - -
Amo10g0484 905 Pfam Urease subunit beta-alpha linker domain 287 317 IPR040881 -
Amo10g0484 905 TIGRFAM urease_gam: urease, gamma subunit 53 153 IPR002026 GO:0016151|GO:0043419
Amo10g0484 905 Hamap Urease subunit beta [ureB]. 184 284 IPR002019 GO:0035550|GO:0043419
Amo10g0484 905 ProSitePatterns Urease active site. 653 669 IPR017950 GO:0009039
Amo10g0484 905 Pfam Urease alpha-subunit, N-terminal domain 324 443 IPR011612 -
Amo10g0484 905 SUPERFAMILY Composite domain of metallo-dependent hydrolases 323 501 IPR011059 GO:0016810
Amo10g0484 905 Pfam Urease beta subunit 186 282 IPR002019 GO:0035550|GO:0043419
Amo10g0484 905 Gene3D Urease, subunit C, domain 1 322 818 IPR011059 GO:0016810
Amo10g0484 905 Gene3D Urease, beta subunit 202 321 IPR036461 -
Amo10g0484 905 Gene3D - 453 886 - -
Amo10g0484 905 TIGRFAM urease_alph: urease, alpha subunit 326 905 IPR005848 GO:0006807|GO:0009039|GO:0016151
Amo10g0484 905 SUPERFAMILY Composite domain of metallo-dependent hydrolases 761 815 IPR011059 GO:0016810
Amo10g0484 905 TIGRFAM urease_beta: urease, beta subunit 185 284 IPR002019 GO:0035550|GO:0043419
Amo10g0484 905 Pfam Amidohydrolase family 449 788 IPR006680 GO:0016787
Amo10g0484 905 Pfam Urease, gamma subunit 53 152 IPR002026 GO:0016151|GO:0043419
Amo10g0484 905 Hamap Urease subunit alpha [ureC]. 322 905 IPR005848 GO:0006807|GO:0009039|GO:0016151
Amo10g0484 905 Gene3D - 56 176 IPR036463 GO:0016151|GO:0043419
Amo10g0484 905 SUPERFAMILY Urease, gamma-subunit 53 156 IPR036463 GO:0016151|GO:0043419
Amo10g0484 905 PRINTS Urea amidohydrolase (urease) protein signature 765 778 IPR005848 GO:0006807|GO:0009039|GO:0016151
Amo10g0484 905 PRINTS Urea amidohydrolase (urease) protein signature 670 686 IPR005848 GO:0006807|GO:0009039|GO:0016151
Amo10g0484 905 PRINTS Urea amidohydrolase (urease) protein signature 739 754 IPR005848 GO:0006807|GO:0009039|GO:0016151
Amo10g0484 905 PRINTS Urea amidohydrolase (urease) protein signature 631 648 IPR005848 GO:0006807|GO:0009039|GO:0016151
Amo10g0484 905 ProSitePatterns Urease nickel ligands signature. 451 464 IPR029754 GO:0016151
Amo10g0484 905 CDD Urease_gamma 56 152 IPR002026 GO:0016151|GO:0043419
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0484 Amo-Chr10 4885619 4895812 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0484 K01427 - gmx:547672 1448.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0912 20 15180756 15191226 Amo10g0484 10 4885619 4895812 hybridization