Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0423 ATGTCGCTTGCATCGTTCTCGATCCTCCGCCACCACCACCGCACGGTGGTGTCTCCCGCCTCATCACTCCCAACTCTCAACACCATCCTCCACCGTTGCTTCCGGTGCCTCCCGTTCGGCGCGGCGGCGGCCACCGCCAGACACCACCGAAACCCTAACCAGCAACGGCAACAGCAACCCCCAAGCAAGAACCTCCTGAAAGCAAAGCAAACCTTCAAAAAGTTCTCCTCCTCCTTGGCTCCCGTCCTCTCCCTCGAGGATTCGCCTCCCTTGTCCGACTCTCAAGCCGTCGGCATCGTCGCAGCCTCCCAGGCCAACTTCATGCGCGTCATCGTCCAAGAACAAGAACCTTCCAGAACGAAACTTCCAGAAGCCTCTTCTTCTTCTTCGGCTGGCTTGGAGCTACTGTGCGTGGTGAGGGAGCTGCTGAAGAAGATAAAGCGGAGAGTGATGGTTGGTGACAAGGTTCTAGTAGGTTCCATTGACTGGGTTGATCGAAGGGGCATGATCGAGAATGTGTTCCAGAGGGATAACGAGATTCTTGACCCTCCCGTCGCCAATGTTGATCACCTGCTTGTGCTTTTTTCGCTTGACCAACCCAAGGTTGAGCCGTTTATGCTCACAAGGTTCCTTGTTGAGGCCGAGTCCACTGGTATTCCTCTCACCCTTGCGCTCAATAAGATTGAGCTTGTGGATGGAGAGGCTGTAAGTTCGTGGAAGTCTAGGTTGCGCAGCTGGGGCTATGAGCCTATTTTCTGCAGCGTGGAGTCTGGACATGGACTTGATCTACTTGCATTCAAATTGAGAGACCAAACAACCGTGATCGTAGGTCCTAGTGGAGTTGGGAAGTCTAGTTTGATCAATGCCCTCAGAAGCAATCCCCGTGTTTGTGATGCTGAAGAAGGGGAGAATTGGTTCGAACCCATTTTAGGTAGCAAGTGGTTTGAAGAACAGAGAGTTGGGGAGGTTTCAACAAGAAGTGGCAGAGGGAAGCATACTACTCGCCATGTCTCTTTGCTTCCATTGTCTGGAGGGGGTTATCTTGCCGACACACCTGGATTTAACCAGCCTAGTTTATTGAAAGTGACAAAGCAGTCTCTTGCACAGACTTTTCCCGAAATCAGGAAAATGGTTAGTGCCAATGAGCCTGCAAAATGCTCATTTAATAATTGTCTACATCTGGGTGAACCTGGGTGCATTGTGAAGGGCGATTGGGAAAGATATTCATACTATTTTCAACTGCTTGATGAGATCAGAATCAGAGAGGAGTTCCAGCTAAGGACATTTGGAACTAAAAGAGAAGGTGATGTAAGGTTCAAAATGGGAGATATGGGTGTTCAGCAGGCAGAACCACGGTTGGAACCAAAGAAGCATAGGAGAGTGTCTCGGAAGAGGATTAACCAGTCGATTTTAGATGAATTAGATGAACTGGACGACAACGGCGACGACACTTCAATTGATGAGGAGAATGATCCCATTTTAAGGGCTATGAAGAATGAAAACTCTTAG 1509 0.497 MSLASFSILRHHHRTVVSPASSLPTLNTILHRCFRCLPFGAAAATARHHRNPNQQRQQQPPSKNLLKAKQTFKKFSSSLAPVLSLEDSPPLSDSQAVGIVAASQANFMRVIVQEQEPSRTKLPEASSSSSAGLELLCVVRELLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFQRDNEILDPPVANVDHLLVLFSLDQPKVEPFMLTRFLVEAESTGIPLTLALNKIELVDGEAVSSWKSRLRSWGYEPIFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINALRSNPRVCDAEEGENWFEPILGSKWFEEQRVGEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIRKMVSANEPAKCSFNNCLHLGEPGCIVKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGDVRFKMGDMGVQQAEPRLEPKKHRRVSRKRINQSILDELDELDDNGDDTSIDEENDPILRAMKNENS* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0423 502 Pfam RsgA GTPase 173 359 IPR010914 GO:0003924|GO:0005525
Amo10g0423 502 MobiDBLite consensus disorder prediction 445 502 - -
Amo10g0423 502 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 96 422 IPR004881 GO:0003924|GO:0005525
Amo10g0423 502 Gene3D - 174 359 IPR027417 -
Amo10g0423 502 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 177 357 IPR030378 GO:0005525
Amo10g0423 502 MobiDBLite consensus disorder prediction 473 487 - -
Amo10g0423 502 Gene3D Probable gtpase engc; domain 3 361 423 - -
Amo10g0423 502 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 86 480 - -
Amo10g0423 502 ProSiteProfiles EngC GTPase domain profile. 186 355 IPR010914 GO:0003924|GO:0005525
Amo10g0423 502 SUPERFAMILY Nucleic acid-binding proteins 96 176 IPR012340 -
Amo10g0423 502 Gene3D - 91 173 IPR012340 -
Amo10g0423 502 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 150 293 IPR004881 GO:0003924|GO:0005525
Amo10g0423 502 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 86 480 IPR004881 GO:0003924|GO:0005525
Amo10g0423 502 CDD YjeQ_EngC 186 416 IPR004881 GO:0003924|GO:0005525
Amo10g0423 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 420 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0423 Amo-Chr10 4307869 4311351 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0423 K06949 - gmx:100796145 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0898 20 14899167 14902525 Amo10g0423 10 4307869 4311351 hybridization