Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0624 ATGGCGGTTTCTACCATAGCCCTGTACGCAAGCCCACCGAGCAGTGTGTGCTCGACGCCGCACCCATGCCAGATCAATGCCCACGGCTCCTGCGACTTCGATATGGGGTCTCGATCCTCGTCGTCCTCGACGGCGTCGACGTCACAGAAGCCTGTAATGGGGGGTCTCTCGTGCCTCTTCTCTTCGCCGGCGCCAGCGGCCGTGAAGCACGCGCCACTGTCGGGATTCTCCGGCGGCGGTGAGGATCACGGTGGCGGCAGAGGGGATGAACTGAACCTTAAGGAACTCGGGAGCTCCTTCTCATACTCGCCGAGCAAGTTTGGTGGTTCTTCTTGGAAGAGGGACCACCATAGCCCCGTTTCTGTCTTCAACGGCCCCGTTTCGTGTAGCAGCACCGTTGGCTCGTCTTCGAATTTGAGGAGCACCGCGAGTTCCGTGAGGATCGGTGGTGGTTCGGAGAGGGTTGGGACCAGTGGGCTGTTTGATGGGTTCGTGAGGAACGCTTTGGGGTCTTGCTTGGATTACGATTCGGCGAGTTTCAAGGTTGGTGGTTTGGATGAGGGTGATTCTTCGGCTTTGGCTGATGAGTTGACCTTCAATTTGGAGGATACTTTTATGGAGGGTGGGTTTGAGCCTTATGCTAAGAAGTTGCTGCTTGGTGCCCAGTTGAGACACAAGATCTTCTGCGAAGAGTTTGTAATCAAGGCCTTTTGTGAAGCCGAGAAAGCGCACAGAGGCCAGGTGCGTGCTAGTGGGGATCCATATTTGCAGCATTGTTTGGAAACTGCTGTGCTGCTCGCTTTGATTGGAGCAAATTCCACGGTGGTTGCTGCAGGGCTCTTGCATGATACCCTTGACGATGCGTTTCTGACCTATGATTACATATTTGGAACGTTTGGTGCTGGGGTTGCTGATTTAGTTGAAGGGGTTTCTAAATTAAGTCACTTGAGCAAGCTTGCTCGAGAAAACAATACAGCTTGCAAATCAGTTGAAGCAGACCGTCTGCATACCATGTTCCTTGCCATGGCAGATGCAAGAGCTGTGCTTATTAAACTGGCAGATCGATTGCACAATATGATGACTCTGGATGCATTGCCAGTGGCCAAGCAACAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGCACCTTTGGCAAATCGCTTGGGAATATCTAGCTGGAAAGAACAATTAGAAAATTTATGTTTTAAACATCTCAACCCCGATCAGCATGATGAGCTATCTTCAAAGCTTGTGGATTCATATGATGAAGCCAGGATTACTTCTGCAATTGAGAAATTAGAGCAAGCACTTAAAGATGAAGGCATATCGTATCATGTCGTTTCTGGGCGGCATAAAAGCTTATATAGCATTTATTGCAAAATGTTGAAGAAGAAACTGACAATAGATGATATCCACGACATCTATGGATTGCGCTTGATTGTTGATAAGGAGGAAGACTGTTACAAAGCATTGACAATTGTTCACCAGTTATGGTCTGAAGTACCTGGAAAGCTAAAAGATTACATACGTCGCCCCAAGTTCAACGGGTATCAATCCCTGCATACTGTGGTGATGGGTGAAGGCAAAGTTCCCCTTGAAGTACAAATTCGAACAAAAGATATGCATTTACAAGCTGAATTTGGGTTTGCTGCTCATTGGAGGTACAAGGAAGATGACTGTCAGCATTCTTCATTTGTGCTTCAGATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGTGAGGCAATGAGTAAGGATTCTACATCTGTTGGATATGGCGATTCAATTAAGCCTCCATGCAAGTTCCCTTCCCATGTTGATGACTGTCCATATTGTTATAAGCCCGACTGTGGTCAAGATGGCCCCGTGTTCGTTATCATGATTGAGAATGATAAGATGTCCGTCCAAGAATTTCGTGCGAACTCAACAGTGATGGATCTGATGGAAAGAGCTGGGCGAGCAAGCTCAAGGTTGATGACATATAGGTTCCCTCTGAAGGAAGAACTGAGGCCAAGACTGAATCACATGCCTGTAAGTGATCCCAATTGCAAGTTGAAGATGGGGGATGTGGTGGAGCTTACACCAGCCATACCTGACAAGTCTTTGACAGAATATAGGGAAGAAATCCAGCGTATGTATGACCGCGGGCTAACCGTCTCCGGCGCTGGACCTACTGCTAGCAGCATGGTTGGCTCAAGAAGCTGA 2208 0.4841 MAVSTIALYASPPSSVCSTPHPCQINAHGSCDFDMGSRSSSSSTASTSQKPVMGGLSCLFSSPAPAAVKHAPLSGFSGGGEDHGGGRGDELNLKELGSSFSYSPSKFGGSSWKRDHHSPVSVFNGPVSCSSTVGSSSNLRSTASSVRIGGGSERVGTSGLFDGFVRNALGSCLDYDSASFKVGGLDEGDSSALADELTFNLEDTFMEGGFEPYAKKLLLGAQLRHKIFCEEFVIKAFCEAEKAHRGQVRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTLDDAFLTYDYIFGTFGAGVADLVEGVSKLSHLSKLARENNTACKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLNPDQHDELSSKLVDSYDEARITSAIEKLEQALKDEGISYHVVSGRHKSLYSIYCKMLKKKLTIDDIHDIYGLRLIVDKEEDCYKALTIVHQLWSEVPGKLKDYIRRPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSKDSTSVGYGDSIKPPCKFPSHVDDCPYCYKPDCGQDGPVFVIMIENDKMSVQEFRANSTVMDLMERAGRASSRLMTYRFPLKEELRPRLNHMPVSDPNCKLKMGDVVELTPAIPDKSLTEYREEIQRMYDRGLTVSGAGPTASSMVGSRS* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0624 735 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 1 734 - -
Amo09g0624 735 SUPERFAMILY HD-domain/PDEase-like 216 406 - -
Amo09g0624 735 SUPERFAMILY Nucleotidyltransferase 396 585 IPR043519 -
Amo09g0624 735 SMART RelA_SpoT_2 449 559 IPR007685 GO:0015969
Amo09g0624 735 Gene3D Hypothetical protein af1432 222 406 - -
Amo09g0624 735 PANTHER - 1 734 - -
Amo09g0624 735 CDD HDc 253 381 IPR003607 -
Amo09g0624 735 Pfam HD domain 240 390 - -
Amo09g0624 735 ProSiteProfiles HD domain profile. 255 359 IPR006674 -
Amo09g0624 735 SMART hd_13 251 368 IPR003607 -
Amo09g0624 735 CDD NT_Rel-Spo_like 429 547 IPR007685 GO:0015969
Amo09g0624 735 Gene3D Beta Polymerase, domain 2 410 539 IPR043519 -
Amo09g0624 735 Pfam Region found in RelA / SpoT proteins 449 558 IPR007685 GO:0015969
Amo09g0624 735 ProSiteProfiles S4 RNA-binding domain profile. 673 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0624 Amo-Chr9 9574928 9580641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0624 256 556 EF-hand Containing Proteins AT3G17470 30.211 4.76e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0624 K00951 - gmx:100787301 1199.5