Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0486 ATGCAGCAGTCTCAGGGGATGACCATGAACCCTATGTCCCAATTCCAACTCCAGCAGACCCTCCAGCGGTCCCCTTCGATGACGCGGAGTGGGCACTTCCCTATGTTGTCTAGTGCTGGAGCAGCGCAGTTTAACTTGTTGTCCTCGCCAAGGCAGAAGGGTGGGCTAGTCCAGGGATCGCAATTCTCATCAGCTAATTCTGCTGGACAGCCACATCAAGGAATGCAAGCAATGGGGATGATGGGGACGCCAAATCTCAGCTCGCAACTAAGAGCTGCTAATGGAGCCATGGCATATGCTCAGCAATTGCGAATAAGTCAAAGTCAGATGAGGCAGAATTCACTTAGCTCTCAGCAGGTTCAAGGCTTACGGTCGTCGTCATCCTTGGCCTTTATGAATTCCCCGTTATCTGGCTTGTCTCAGAATGGACAGCCTGCAATGATTAATTCTTTAACACAGCAACAGTGGTTTAAGCAAATGCCTGCAATGTCAGGTCCTGGTTCACCATTGCGTCTTCAACAGCAGAGGCAGCAACAACTGGCTTCACCTGCGGCTCAACTGCAACAAAGATCACAGCCAGATGCTACTGCATCTGGCGCAACTACCCCAGGGGGAAGCTCAAGCCAAGGAACTGAAGCGACAAACCAACTCCTTGGAAAAAGAAAGATACAGGAGTTAGTTGATCCACAGTGTAAGCTGGACCCTGAAGTTATAGACCTTTTTTTAGAGCTTGCTGATGACTTCATTGATGCAGCGACAACACATGGTTGCATGTTGGCAAAACACAGAAAGTCATCCACTTTGGAGTCCAAGGATTTATTGCTACACCTAGAGAAAAATTGGGATTTGAAGATACCAGGATATTCAAGTGAAGATAAAAAGAATCAAGGCAAACCTCTACAAAATGACCTACACAAGAGGCGCTTGGATATGATTCGTTCATTGATGGAATCATCACATGCCGAACCAAGTATGAACAATTCTAAAGACATAAGTAGACAGGGCATTCCTAACCCTGTTGGTGGCCACCACCTAATAAGGCCCCTGGGTTTCAATAGTGATGATCGTAGTTCTTGGCTTCAAGCTTTTTGTTTTAACGGCCTCTATATTGGTATGAATTAG 1122 0.467 MQQSQGMTMNPMSQFQLQQTLQRSPSMTRSGHFPMLSSAGAAQFNLLSSPRQKGGLVQGSQFSSANSAGQPHQGMQAMGMMGTPNLSSQLRAANGAMAYAQQLRISQSQMRQNSLSSQQVQGLRSSSSLAFMNSPLSGLSQNGQPAMINSLTQQQWFKQMPAMSGPGSPLRLQQQRQQQLASPAAQLQQRSQPDATASGATTPGGSSSQGTEATNQLLGKRKIQELVDPQCKLDPEVIDLFLELADDFIDAATTHGCMLAKHRKSSTLESKDLLLHLEKNWDLKIPGYSSEDKKNQGKPLQNDLHKRRLDMIRSLMESSHAEPSMNNSKDISRQGIPNPVGGHHLIRPLGFNSDDRSSWLQAFCFNGLYIGMN* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0486 373 MobiDBLite consensus disorder prediction 52 73 - -
Amo09g0486 373 MobiDBLite consensus disorder prediction 160 213 - -
Amo09g0486 373 MobiDBLite consensus disorder prediction 319 334 - -
Amo09g0486 373 Pfam Transcription initiation factor TFIID subunit A 219 283 IPR003228 GO:0005669|GO:0006352
Amo09g0486 373 Gene3D Histone, subunit A 213 284 IPR009072 GO:0046982
Amo09g0486 373 CDD TAF12 218 283 IPR003228 GO:0005669|GO:0006352
Amo09g0486 373 MobiDBLite consensus disorder prediction 1 33 - -
Amo09g0486 373 MobiDBLite consensus disorder prediction 52 86 - -
Amo09g0486 373 SUPERFAMILY Histone-fold 216 284 IPR009072 GO:0046982
Amo09g0486 373 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 4 187 IPR037794 GO:0000124|GO:0005669|GO:0046695
Amo09g0486 373 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 191 348 IPR037794 GO:0000124|GO:0005669|GO:0046695
Amo09g0486 373 MobiDBLite consensus disorder prediction 319 339 - -
Amo09g0486 373 MobiDBLite consensus disorder prediction 168 213 - -
Amo09g0486 373 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 4 187 - -
Amo09g0486 373 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 191 348 - -
Amo09g0486 373 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0486 Amo-Chr9 6237445 6244878 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0486 K03126 - gmx:100783017 270.781