Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0210 ATGGCTCACCAACCTTTTGACCCATACTACGCATACCAGCAGCAGGATGAGCGAAGCCACATCAACACGTTGTTTGTGTCGGGCCTCCCAGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTCCGCCGTCGCCCCGGCTTCGACTCCTGCCAGCTTAAGTACACCGGACGCGCCAACCAGGTTGTTGCGTTTGCTACTTTTTTCAATCATCAATCGGCGATGGCAGCATTGCACGCTTTAAATGGCGTGAAATTTGATCCACAAGCTGGTTCTGTTTTGCATATTGAACTTGCTAGGTCAAACTCAAGGAGGAAGCGTAAGCCAGGTAGCGGAGCCTATGTTGTTATAGATAAACGGTCTAAAGGAGAGGCTGATGTTCAAGGGTCATCAAGTGATGATGGTGACAGTGATCCTGATGAACCATCAGGAAGTGGTGGCAGCCATGGTGATTTAGCAACCACTAAAAGCAGTGAGATTAAGTTTGGCTCTGACAGTGCTGTGTCTGCGGAGCAGCATGAAAGGGGTCCTGATGGAGGACCATGCTCTACTCTCTTCATTGCAAATCTTGGTCCAAACTGCACCGAAGATGAACTGAGACAAACTTTCTCAGTGTATGCTGGATTCAACATGGTCAAAATCCGTTCTAGAGGAGGAATGCCGGTTGCATTTGCTGATTTTGATGAAGTTGAACAAGCTACTAAGGTCATGGAGCAGCTTCAGGGCAGCATGCTGTCATCGTCAGATCGGGGTGGCATGCACATAGAATACGCAAGGTCTAAAATGAGGAAGCATTAG 798 0.4875 MAHQPFDPYYAYQQQDERSHINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQAGSVLHIELARSNSRRKRKPGSGAYVVIDKRSKGEADVQGSSSDDGDSDPDEPSGSGGSHGDLATTKSSEIKFGSDSAVSAEQHERGPDGGPCSTLFIANLGPNCTEDELRQTFSVYAGFNMVKIRSRGGMPVAFADFDEVEQATKVMEQLQGSMLSSSDRGGMHIEYARSKMRKH* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0210 265 Gene3D - 17 104 IPR012677 -
Amo09g0210 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 260 IPR000504 GO:0003723
Amo09g0210 265 PANTHER RNA-BINDING PROTEIN-RELATED 8 254 - -
Amo09g0210 265 MobiDBLite consensus disorder prediction 102 155 - -
Amo09g0210 265 CDD RRM_scw1_like 181 259 - -
Amo09g0210 265 Gene3D - 178 265 IPR012677 -
Amo09g0210 265 SUPERFAMILY RNA-binding domain, RBD 22 246 IPR035979 GO:0003676
Amo09g0210 265 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 8 254 - -
Amo09g0210 265 SMART rrm1_1 184 256 IPR000504 GO:0003723
Amo09g0210 265 SMART rrm1_1 23 97 IPR000504 GO:0003723
Amo09g0210 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 87 IPR000504 GO:0003723
Amo09g0210 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 246 IPR000504 GO:0003723
Amo09g0210 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 101 IPR000504 GO:0003723
Amo09g0210 265 CDD RRM_RBPMS_like 22 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0210 Amo-Chr9 2298924 2302476 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0210 - - gmx:100810989 429.869