Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0177 ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCTCAAAGATCTGAGAGAGTGAAGTCTGTGGATCTACATCCTACAGAGCCATGGATTTTGGCAAGTTTATACAGTGGCACTGTCTGCATATGGAACTACCAATCTCAGACCATGGCTAAGTCTTTTGAGGTAGCTGAATTACCAGTTAGGTCGGCTAAGTTTATTGCACGTAAACAGTGGGTTGTTGCCGGAGCAGATGATATGCATATTCGTGTATATAATTACAACACAATGGATAAGGTTAAAATATTTGAGGCACACACAGATTACATTAGGTGTGTGGCAGTACATCCTAACCTTCCTTATGTGCTTTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGACAAGGGCTGGGTTTGTACCCAGGTATTTGAGGGGCATTCTCATTATGTCATGCAAGTGACATTTAACCCTAAAGATACCAACACCTTCGCAAGTGCCTCTCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCTCCAGACCCTAATTTTACATTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAACCTTACCTAATAACTGGATCTGATGATCACACTGCAAAGGTATGGGATTATCAGACTAAAAGTTGTGTCCAGACTTTGGAGGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAGCTCCCTATAATTATTACTGGTTCTGAGGATGGTACAGTACGAATATGGCATTCCACAACGTATAGACTTGAGAATACATTGAATTATGGTCTTGAAAGAGTTTGGGCAATTGGATACCTCAAGGGTTCACGTCGGGTTGTGATTGGATACGATGAAGGTACTATTATGGTCAAACTTGGTCGAGAAGAACCAGTGGCCAGCATGGATAACAGCGGGAAGATTATCTGGGCTAAGCATAATGAAATTCAGACTGTCAATATAAGAAGTGTAGGAGCAGACACACAGATTGCTGATGGGGAAAGGTTACCTTTGGCTGTTAAGGAGCTTGGGACATGTGATCTCTACCCACAAAGCTTGAAACACAATCCAAATGGTCGATTTGTTGTTGTTTGTGGAGATGGTGAGTATATTATATACACTGCTTTGGCATGGAGAAATAGATCGTTTGGCTCGGCATTGGAATTCGTCTGGTCTTCGGATGGGGAGTATGCTGTGAGAGAAAGTACATCAAAAATTAAGATTTTCAGCAAGAATTTCCAGGAAAAGAAGAGTATCCGGCCAACATTTTCAGCTGAACGAATATTTGGTGGCACTGTACTGGCAATGTGCTCAAATGATTTCATTTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGGATTGATGTTAATGTGAAAAACCTCTATTGGGCTGATAGTGGTGATCTAGTGGTGATTGCAAGTGACACATCATTCTACATCTTGAAGTACAACCGTGATGTTGTTGCATCATATCTTGACAGTAAAACGGCCGTTGATGAGCAAGGTGTTGAAGATGCCTTTGAGCTCCTCCATGAAATGAATGAGCGTGTGAGAACAGGGATCTGGGTTGGGGATTGTTTTATCTACAACAATTCTTCTTGGAGGCTTAACTATTGTGTTGGTGGAGAGGTGACTACAATGTCTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAAGGTTTACTTGATAGACAAAGAGTTCAATGTAATGGGATACACACTACTTTTGAGCTTGATTGAGTACAAGACTCTTGTGATGCGTGGTGACTTTGATAGGGCCAATGAAGTTCTACCATCCATTCCTAAAGAGCATCACAACAGTGTGGCTCGATTCCTGGAATCACGAGGCATGATAGAGGATGCTCTTGAAGTAGCTACTGACCCTGACTATAGGTTTGATCTAGCCATGCAGCTTGGGAGATTAGAGGTTGCAAAGAGCATTGCCACGGAAGTGCAGAGTGAGTCTAAATGGAAGCAGTTGGGAGAATTAGCCATGTCTACTGGAAAGTTAGAAATGGCTGAGGAGTGTCTAAAGCATGCAATGGATTTGAGTGGATTATTGCTGCTATATTCTTCTTTAGGAGATGCTGAAGGAATTTCAAAACTTGCATCTCTTGCTAAAGAGCAAGGGAAGAACAATGTTGCATTCCTTTGCTTATTTACACTGGGTAAACTTGAAGATTGCCTTCAACTGTTGATAGAAAGCAACCGGATTCCTGAGGCTGCTTTAATGGCTCGATCTTATCTCCCAAGCAAGGTGTCAGAGATAGTGGCAATTTGGCGAAAAGATCTGAACAAGGTTAGTCCAAAAGCTGCGGAATCATTGGCTGATCCTGAAGAGTATCCTAATTTGTTTGACGATTGGCAAGTTGCACTTGCTGTTGAATCCAAAGCAGCAGAAAAAAGGGGCGTTTATCCTCCTGCAGAGGAGTACATCAACCATGCTGATAAATCACACATCCCTCTTGTTGAAGCTTTCAGAAACATGCAGATCGAAGAAGAGGAACAGCCTCTAGAGAATGGGGAATCCTACCATGAGTTGGCCGAACAAAACGAAGAGGAATATACAGAGGAACAAAATGCAGAGGAAGGAAGCCAAGAGGAAGTTGTAGTGGATGCAGATTCTACCGATGGTGCAGTCCTCGTTAATGGTACCGAGGCTAAGGAAGAGTATGAAACCCCATCAACATAA 2733 0.4248 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVAELPVRSAKFIARKQWVVAGADDMHIRVYNYNTMDKVKIFEAHTDYIRCVAVHPNLPYVLSSSDDMLIKLWDWDKGWVCTQVFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIRSVGADTQIADGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESTSKIKIFSKNFQEKKSIRPTFSAERIFGGTVLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVVIASDTSFYILKYNRDVVASYLDSKTAVDEQGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMSHLDRPMYLLGYLASQSKVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDFDRANEVLPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFDLAMQLGRLEVAKSIATEVQSESKWKQLGELAMSTGKLEMAEECLKHAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFTLGKLEDCLQLLIESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVSPKAAESLADPEEYPNLFDDWQVALAVESKAAEKRGVYPPAEEYINHADKSHIPLVEAFRNMQIEEEEQPLENGESYHELAEQNEEEYTEEQNAEEGSQEEVVVDADSTDGAVLVNGTEAKEEYETPST* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0177 910 MobiDBLite consensus disorder prediction 865 884 - -
Amo09g0177 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Amo09g0177 910 PANTHER COATOMER 1 872 - -
Amo09g0177 910 SUPERFAMILY NHL repeat 221 492 - -
Amo09g0177 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Amo09g0177 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Amo09g0177 910 SMART WD40_4 46 85 IPR001680 GO:0005515
Amo09g0177 910 SMART WD40_4 174 215 IPR001680 GO:0005515
Amo09g0177 910 SMART WD40_4 131 171 IPR001680 GO:0005515
Amo09g0177 910 SMART WD40_4 4 43 IPR001680 GO:0005515
Amo09g0177 910 SMART WD40_4 218 257 IPR001680 GO:0005515
Amo09g0177 910 SMART WD40_4 88 127 IPR001680 GO:0005515
Amo09g0177 910 Coils Coil 862 882 - -
Amo09g0177 910 MobiDBLite consensus disorder prediction 849 910 - -
Amo09g0177 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Amo09g0177 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Amo09g0177 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Amo09g0177 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Amo09g0177 910 PANTHER COATOMER SUBUNIT BETA' 1 872 - -
Amo09g0177 910 Pfam WD domain, G-beta repeat 133 171 IPR001680 GO:0005515
Amo09g0177 910 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Amo09g0177 910 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Amo09g0177 910 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Amo09g0177 910 Gene3D - 11 300 IPR015943 GO:0005515
Amo09g0177 910 MobiDBLite consensus disorder prediction 849 864 - -
Amo09g0177 910 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Amo09g0177 910 CDD WD40 17 297 - -
Amo09g0177 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Amo09g0177 910 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Amo09g0177 910 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Amo09g0177 910 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Amo09g0177 910 PIRSF Beta'-COP 2 887 IPR016453 -
Amo09g0177 910 Gene3D - 590 798 - -
Amo09g0177 910 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0177 Amo-Chr9 1872665 1882604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0177 15 367 Miscellaneous Gene Families AT5G08390 19.613 4.03e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0177 K17302 - gmx:100797508 1707.19