Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0074 ATGGAAGTTAAAGAAGAAGAAGAAGTGAAGTTCTCAGCGTTCCCTTTCAAGCCATATTCGATTCAGATGGAATTCATGAAGGCTCTTTATCACTCTCTCAACCAAGGTGGCGTCTCCATGTTAGAAAGCCCTACTGGTACTGGGAAGACTATGAGTGTTATTTGTAGTGCTTTGCAATGGGTGCTTGATCAGAGGAGACAGCAGGAATCACAGGAAGCGTGTGGCAATGGTGATGGCGGAGTTGGTTCGGATGATGACCCTGATTGGTTGAGGAACTTTGTTGTTAACAAAGACCCCCAAGTTAAAGAGGATAAAGTGAAAAACAAGAAGGACAAGTTTCGGTATCTGTCAGGAAAAGCTGATAAGAAGGAGAAGGAGAATAAGGTAATTAGTAAAGATTTTGGGGATGTGCATTGTGAACATTCTCCTGCTGAAAAGATATGTCAAAGTTCACAAAAGAAAATTGATACAACAGATGTTGATGACAAGGAGTTTCTACTTGAAGAGTATGAGAGTGAAGAAGAAGGGGATTTAGGGAGTGTGATGTTGAAGAGGAAGGCTACTAAAAGCATGCTTAATTCTTCGAGTGAAGATGAGTCTGATGATGCTGAGGGGGAGGAGGATGAGAAGAAGTTCAAGGTTTATTTCTGTAGCCGAACACATTCACAGCTTTCGCAGTTCATAAAGGAGTTACAGAAGACAATCTTTGCTAATGAGATGACTGTTGTGAGTTTAGGGTCAAGGAAAAATCTTTGCATTAACAAAGATGTGCTTTCACTTGGAAACTCCACACGCATAAATGAGCGATGCTTGGAACTCCAGAAGAAAAAGAAAAATGAAGCTACTAGAGTGAAGAACATAAGAGTAGGTGCACACACACGCAGAACAAAAGCCTCTTCTGGTTGCCCAATGCTTAGAAAACATAAACTACAACATGAATTCAGGAATGAGGTATCTGAACGAGGACCCTTGGATATTGAAGATCTTGCAAACCTTGGAAAAACATTGGGAACCTGTCCGTACTATGGCTCTAGAAGCATGGTTGTGAGAGCTGATCTTGTTGTTCTTCCATATCAATCTCTTTTGTCGAAATCATCTCGTGAAGCTCTTGGTCTGAATTTAAAATCCAATATTGTTATAATAGATGAGGCACATAATTTAGCTGATTCACTCATCAGCATGTATGACTCAAAAATTACTTTATCACAGCTGGAGAATGTGCATTGCCATGTAGAACGGTACTTTGTGAGATTCCGGAGTCTTTTGGGACCAGCCAACCGGAGATATATTCAAACTCTGATGGTTCTGACTCAAGCTTTCCTTCGAGTACTACTCAATGAGAAGAATGGAAATCCGATGGATTCTTACCATGACATAGAACATGCTTCTGAAGAAAGTAGAACATCTGATTTTACTATGGCCATCAATGATTTTATCTTTGAACTAAATATAGACAATATCAACTTGATCAAATTGTTAAAGTATATAAAGGAAAGTAATATCATGCACAAGGTTAATAGTTATGGAGAAAAGGTGGCTAATTCGGAGAACACATCAGCACGCAATGAAATTCGGGAACATGGGGAGGAGGGGGGATGTCTGTCTGCTTTCCAGGCATTAGCGGAGATATTACTGTCACTGACAAACAATGATAGCGATGGAAGGATAATAGTTTCGAGGTCTAGTTCATCATCAAGCTTTAGGAAACAAGGGGGATATATCAAGTTTGTTATGCTCAGTGGCGAGAAGATTTTCTCTGAGATTGTAGATCAAGCACATGCTGTTCTATTAGTAGGGGGAACTCTTCAACCTATAGAAGAGACAAGGGAGCGATTATTTCCGTGGTTACCACCGAATCAGTTGCATTTCTTTTCATGCGGCCACATTGTCCCTCCAGATAGCGTTATGCCAATTGCGGTTTCTCGTGGTCCTTCTGGCCGCTCCTTTGATTTTAGCTACAGCTCTAGAAGCTCACTAGACATGATGCGAGAACTAGGCCTTTTGCTATGTAACTTGGTGACTGTGGTTCCTGAAGGAATCGTAGTCTTCTTCCCTTCTTTCGATTATGAAGGTAAAGTGTATGAACTCTGGGGATCTTCTGGCATCATTGAGAGGATTACTAGGAGGAAGCGTATCTTTAGAGAGCCTAGGAATAATATGGAAGTTGAATCTGTTCTAAAGGAATATAAAGATRCCATTTGTGCATTATCAAGTGTGAGTACAGAAGCAAACCAAGCATCTCAAAGTGGTGCAGTGCTCCTTGCTGTTGTTGGTGGGAAGATATCTGAAGGGATCAACTTAAGTGATGGAATGGGTCGGTGTGTCATCATGGTTGGACTGCCATATGCTAGTCCATCTGATATCGAGTTATTGGAAAGGATAAAGCACATAGAAGGTTTTCGAAATTCGAAGTCCATTGAAAATACCCTATTTGGTGCAAGTTGTGATGTATATAGTGGAGATGCACAAGGTGGTTTTGACATCTTAAGAAGTTGCAGCCAGAGAGGGAAAGAGTACTATGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGTAGAGCAATTCGTCATATTAATGACTATGCAGCAATTTTGCTTGTTGATACTAGATATGCATCTGATTCCTCCAAAAGGAGCTTATCCCACCCAGTCAACAAGCTACCACAGTGGATAAAAGATCGTCTTGTTTCTTCCACTAATAACTATGGTGAAGTGCACAGGTTGCTCCATCAGTTTTTCAAATTTAAAAAGAGAAGCTGA 2763 0.4054 MEVKEEEEVKFSAFPFKPYSIQMEFMKALYHSLNQGGVSMLESPTGTGKTMSVICSALQWVLDQRRQQESQEACGNGDGGVGSDDDPDWLRNFVVNKDPQVKEDKVKNKKDKFRYLSGKADKKEKENKVISKDFGDVHCEHSPAEKICQSSQKKIDTTDVDDKEFLLEEYESEEEGDLGSVMLKRKATKSMLNSSSEDESDDAEGEEDEKKFKVYFCSRTHSQLSQFIKELQKTIFANEMTVVSLGSRKNLCINKDVLSLGNSTRINERCLELQKKKKNEATRVKNIRVGAHTRRTKASSGCPMLRKHKLQHEFRNEVSERGPLDIEDLANLGKTLGTCPYYGSRSMVVRADLVVLPYQSLLSKSSREALGLNLKSNIVIIDEAHNLADSLISMYDSKITLSQLENVHCHVERYFVRFRSLLGPANRRYIQTLMVLTQAFLRVLLNEKNGNPMDSYHDIEHASEESRTSDFTMAINDFIFELNIDNINLIKLLKYIKESNIMHKVNSYGEKVANSENTSARNEIREHGEEGGCLSAFQALAEILLSLTNNDSDGRIIVSRSSSSSSFRKQGGYIKFVMLSGEKIFSEIVDQAHAVLLVGGTLQPIEETRERLFPWLPPNQLHFFSCGHIVPPDSVMPIAVSRGPSGRSFDFSYSSRSSLDMMRELGLLLCNLVTVVPEGIVVFFPSFDYEGKVYELWGSSGIIERITRRKRIFREPRNNMEVESVLKEYKDXICALSSVSTEANQASQSGAVLLAVVGGKISEGINLSDGMGRCVIMVGLPYASPSDIELLERIKHIEGFRNSKSIENTLFGASCDVYSGDAQGGFDILRSCSQRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSSKRSLSHPVNKLPQWIKDRLVSSTNNYGEVHRLLHQFFKFKKRS* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0074 920 Gene3D - 647 888 IPR027417 -
Amo09g0074 920 CDD SF2_C_XPD 633 872 - -
Amo09g0074 920 Pfam DEAD_2 216 404 IPR010614 GO:0003677|GO:0003678|GO:0005524
Amo09g0074 920 TIGRFAM rad3: DNA repair helicase (rad3) 156 903 IPR013020 GO:0003678
Amo09g0074 920 SMART deadxpd 10 427 IPR006554 GO:0003678|GO:0016818
Amo09g0074 920 PANTHER ATP-DEPENDENT DNA HELICASE DDX11-RELATED 11 906 IPR028331 -
Amo09g0074 920 SMART Cxpdneu3 687 874 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Amo09g0074 920 Gene3D - 187 442 IPR027417 -
Amo09g0074 920 Gene3D - 15 72 IPR027417 -
Amo09g0074 920 MobiDBLite consensus disorder prediction 69 89 - -
Amo09g0074 920 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 8 443 IPR014013 GO:0005524
Amo09g0074 920 Pfam Helicase C-terminal domain 669 885 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Amo09g0074 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 397 IPR027417 -
Amo09g0074 920 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 11 906 IPR045028 -
Amo09g0074 920 SMART ultradead3 14 462 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0074 Amo-Chr9 816713 821288 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0074 K11273 - gmx:106794132 1293.49