Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0066 GCTGAAAACAAAGTTCCACAGATTGTATTTCGATCCATGGCATCAAGACGGCGCATGTTGTTAAAGGTCATAATCCTTGGAGATAGCGGAACTTTCTTACAAAACRTGTATGTGAATCGAAAGTTTAGTAATCAGTATAAGGCTACCATTGGTGCGGATTTTCTAACCAAGGAAGTTCAGTTTGAAGATAGGTTGTTCACATTGCAGATTTGGGACACTGCTGGTCAAGAGCGCTTTCAGAGTCTCGGTGTGGCTTTCTATCGGGGTGCAGACTGTTGTGTCCTTGTATATGATGTAAATGTCATGAAATCTTTTGAGAACCTTAATCACTGGCGAGAAGAGTTTCTTATTCAGGCTAGTCCATCTGATCCTGAAAACTTCCCATTTGTTGTCTTGGGGAACAAAATAGATGTCGAYGGTGGAAACAGCCGAGTTATCTCTGAGAAGAAAGCAAAGGCATGGTGTGCTTCCAAGGGAAACATTCCGTACTTCGAGACCTCTGCAAAAGAAGGATTTAATGTTGAAGCTGCTTTCCAGTGTATAGCCAAGAATGCACTCAAGAACGAACCTGAAGAAGAAATGTACCTCCCTGACTCAATCGATGTTGGTGGTGGTGGTCGACAGCAGAGATCCACAGGCTGTGAATGTTAA 651 0.4286 AENKVPQIVFRSMASRRRMLLKVIILGDSGTFLQNXYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNHWREEFLIQASPSDPENFPFVVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNEPEEEMYLPDSIDVGGGGRQQRSTGCEC* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0066 216 ProSiteProfiles small GTPase Ras family profile. 15 216 IPR001806 GO:0003924|GO:0005525
Amo09g0066 216 CDD Rab7 21 191 - -
Amo09g0066 216 ProSiteProfiles small GTPase Rab1 family profile. 16 216 - -
Amo09g0066 216 PANTHER OS05G0516600 PROTEIN 13 214 - -
Amo09g0066 216 PRINTS Transforming protein P21 ras signature 41 57 - -
Amo09g0066 216 PRINTS Transforming protein P21 ras signature 59 81 - -
Amo09g0066 216 PRINTS Transforming protein P21 ras signature 125 138 - -
Amo09g0066 216 PRINTS Transforming protein P21 ras signature 163 185 - -
Amo09g0066 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 195 IPR027417 -
Amo09g0066 216 SMART rab_sub_5 21 188 - -
Amo09g0066 216 SMART ras_sub_4 18 188 - -
Amo09g0066 216 Gene3D - 13 198 IPR027417 -
Amo09g0066 216 SMART rho_sub_3 23 188 IPR001806 GO:0003924|GO:0005525
Amo09g0066 216 TIGRFAM small_GTP: small GTP-binding protein domain 31 181 IPR005225 GO:0005525
Amo09g0066 216 SMART ran_sub_2 26 202 - -
Amo09g0066 216 MobiDBLite consensus disorder prediction 197 216 - -
Amo09g0066 216 PANTHER RAB FAMILY 13 214 - -
Amo09g0066 216 Pfam Ras family 22 186 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0066 Amo-Chr9 736591 739136 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0066 K07897 - gmx:100305824 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0235 19 2750552 2753169 Amo09g0066 09 736591 739136 hybridization