Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0049 ATGAGCAGACCAGGGGACTGGAACTGCAGGTCATGCCAGCATTTGAACTTCCAAAGGCGGGATTCGTGCCAGCGATGCGGCGACTCGAAATACGGCGACAGAGTCGTCGATTTCGGGGGTTTTGGAGGAGGAGGAGGTAGAGGATCTTCATTTGGAATGATGACCGGTTCCGACGTTCGCCCCGGCGACTGGTACTGCGCCGCAGGTAACTGCGGTGCACACAACTTTGCTAGCCGCTCTAGCTGCTTTAAGTGTGGTGCATTCAAGGATGACTTGGCTGGCGCCTTCAACAGCGAATTCTCGCGCTCGAGATACGGCGGTGGCGGTGGCTGGCGGCGGCGATCAGGATGCAATGAACACAACTTTGCTAGCAGACTTGAATGTTTCAAATGCAGTGCTCCAAGGGACTACTAG 414 0.558 MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYGDRVVDFGGFGGGGGRGSSFGMMTGSDVRPGDWYCAAGNCGAHNFASRSSCFKCGAFKDDLAGAFNSEFSRSRYGGGGGWRRRSGCNEHNFASRLECFKCSAPRDY* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0049 137 PANTHER ZINC FINGER PROTEIN 101 136 - -
Amo09g0049 137 Pfam Zn-finger in Ran binding protein and others 3 28 IPR001876 -
Amo09g0049 137 Pfam Zn-finger in Ran binding protein and others 60 87 IPR001876 -
Amo09g0049 137 Pfam Zn-finger in Ran binding protein and others 115 135 IPR001876 -
Amo09g0049 137 SUPERFAMILY Ran binding protein zinc finger-like 57 90 IPR036443 -
Amo09g0049 137 PANTHER BNAA03G57490D PROTEIN 101 136 - -
Amo09g0049 137 ProSiteProfiles Zinc finger RanBP2 type profile. 60 91 IPR001876 -
Amo09g0049 137 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Amo09g0049 137 PANTHER ZINC FINGER PROTEIN 1 96 - -
Amo09g0049 137 SUPERFAMILY Ran binding protein zinc finger-like 111 136 IPR036443 -
Amo09g0049 137 SMART zf_4 5 29 IPR001876 -
Amo09g0049 137 SMART zf_4 109 134 IPR001876 -
Amo09g0049 137 SMART zf_4 62 88 IPR001876 -
Amo09g0049 137 ProSitePatterns Zinc finger RanBP2-type signature. 64 85 IPR001876 -
Amo09g0049 137 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Amo09g0049 137 Gene3D - 55 91 - -
Amo09g0049 137 Gene3D - 109 136 - -
Amo09g0049 137 Gene3D - 2 32 - -
Amo09g0049 137 PANTHER BNAA03G57490D PROTEIN 1 96 - -
Amo09g0049 137 SUPERFAMILY Ran binding protein zinc finger-like 2 33 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0049 Amo-Chr9 539268 539943 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0049 - - adu:107463728 250.366