Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0020 ATGCTTTCTAAGTCTTCTGATATTGCTTTTAAGTGTTCTGCACATTTTGATTCCAAATGTTTTGGAGAATATGCAATATCTTTGCTCGAAAGATGCAATTCCATGGAACAGTTAAAGCAAATTCATTCACAAACAATCAAAATGGGTCTAACTTCAGACCATTTATTTCAAAACAAAGTTATAGTCTTCTGTTGTACCAAGGATTGTGGAGATGTGAAATATGCTCATAAGGTGTTTGATACAATTCCAAAACCAAGTGGGTTCATTTGGAACACCATGATGAAGGGCTATTCTAGGAATAACTGTCCTGAAATTGGAGTTTCTATGTATATAGAAATGATCAGCAACGACACCAAGCCCGATCATTACACGCTTCCGTTCTTGTTGAAGGGATTCAACAGCAATGTGGCTTTGCGGTATGGGAAAATCTTGTTTAACAATGCAGTGAAACATGGATTTGATTCTAACGTGTTTGTTCAAAAGGCTTTCATTCATGTGTTTTCCTTGTGTGGATGTGTTACCTGGAATGTAATGATATCCGGGTATAACAGAGTTAAGGCGTTTCAGAAATCAAAGAAGCTTTTTTCTGAGATGGAGAAGAAAGGAGTATCACCCAATTCAGTTACTATAGTTTTGATGCTTTCAGTATGCTCTAAATTGAAGGATTTACATGGGGGAAAGCACATATATAAGTATGTTGAAAAGGGTATTGTTGAACCTAATCTCATATTGGAAAATGCCTTAATTGATATGTTTGCAGTCTGTGGAGAAATGGGTGCTGCACAAAGTGTTTTCAACAAAATGAAGAGTAGAGATGTAATTTCTTGGACTTCCATCGTCTCAGGGTTCGCCAATGATGGCGAAATTAATTTAGCTAGGAAGTATTTTGATCAAATGCCTGAAAGAGATTATGTTTCCTGGACTGCCATGATTGATGGATACCTTAGACTTAATCATTTCAGGGAGGCTCTGGTGCTTTTCCGTGAGATGCAAATGTCAAATGTAAAACCTGATGAATTCACCATGAATGACACTTTTGTTGGGAATGCTCTGATAGACATGTACTTCAAATGTGGTAATGTTGAGAAAGCAAGGAAAATATTCAAGGAAATGCATCAGAAAGACAAGTTTACATGGACAGCAATGATAGTTGGTCTTGCCATTAATGGCCATGGTGAAGAAGCTCTTTCCATGTTTTCAAATATGATAGAAGCTTCAGTTACACCAGACGAGGTAACCTATATTGGTGTCCTGTGTGCATGTACACATGCCGGCATGCATGACCGAGCACACGGAATCAAGCCAAATATGACACATTATGGATGCATGGTTGATCTTCTTGGAAGAGCTGGCCAATTAAAAGAAGCTCTTGATGTCATTAAGACTATGCCCTTAAAGCCGAATTCAATTGTTTGGGGATCTCTTCTTGGTGCTTGTAGAGTTCACAGAAATGTGGAGCTGGCTGAAATGGCAGCAAAACAAATTCTTGAGTTAGAGCCTGAAAATGGAGCTGTTTATGTCCTGTTATGCAACATATACGCGCGTGCAAGAGATGGGAGAGCTTGCGCCGTCCGGGAAACCATGATGGAGAAAGGAATCAAGAAAACACCAGGTTGCAGCTTGATGGAAATGAATGGCAATGTATATGAATTTGTTGCTGGGGACCAATCACATCCTCAATCTAAAGAGATATATGCAAAGCTAGAAAACATGATGCAAGAGTTGAAGATTGCAGGGTATTCACCTGATACCTCAGAGGTTTTTCTTGATATTGGGGAAGAGGATAAGGAGAGTGCAGTTTATAGGCATAGTGAGAAGTTGGCTATTGCCTATGCAATTATTAGTTCAGGAAAAGAAGTTACCATAAGAATAGTAAAGAATCTTAGAATGTGTGTGGATTGTCACCATATGGCAAAGTTGGTATCTGAAGTTTATGGTAGGGAGATAATTGTTAGGGATAGGACTAGATTCCATCATTTCAGCCATGGTTCATGTTCATGTAATGATTTCTGGTAA 2016 0.3864 MLSKSSDIAFKCSAHFDSKCFGEYAISLLERCNSMEQLKQIHSQTIKMGLTSDHLFQNKVIVFCCTKDCGDVKYAHKVFDTIPKPSGFIWNTMMKGYSRNNCPEIGVSMYIEMISNDTKPDHYTLPFLLKGFNSNVALRYGKILFNNAVKHGFDSNVFVQKAFIHVFSLCGCVTWNVMISGYNRVKAFQKSKKLFSEMEKKGVSPNSVTIVLMLSVCSKLKDLHGGKHIYKYVEKGIVEPNLILENALIDMFAVCGEMGAAQSVFNKMKSRDVISWTSIVSGFANDGEINLARKYFDQMPERDYVSWTAMIDGYLRLNHFREALVLFREMQMSNVKPDEFTMNDTFVGNALIDMYFKCGNVEKARKIFKEMHQKDKFTWTAMIVGLAINGHGEEALSMFSNMIEASVTPDEVTYIGVLCACTHAGMHDRAHGIKPNMTHYGCMVDLLGRAGQLKEALDVIKTMPLKPNSIVWGSLLGACRVHRNVELAEMAAKQILELEPENGAVYVLLCNIYARARDGRACAVRETMMEKGIKKTPGCSLMEMNGNVYEFVAGDQSHPQSKEIYAKLENMMQELKIAGYSPDTSEVFLDIGEEDKESAVYRHSEKLAIAYAIISSGKEVTIRIVKNLRMCVDCHHMAKLVSEVYGREIIVRDRTRFHHFSHGSCSCNDFW* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0020 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Amo09g0020 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 302 IPR002885 -
Amo09g0020 671 PANTHER - 344 665 - -
Amo09g0020 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 374 IPR002885 -
Amo09g0020 671 Gene3D Tetratricopeptide repeat domain 429 574 IPR011990 GO:0005515
Amo09g0020 671 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 27 171 - -
Amo09g0020 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
Amo09g0020 671 Pfam DYW family of nucleic acid deaminases 579 671 IPR032867 GO:0008270
Amo09g0020 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Amo09g0020 671 Pfam PPR repeat 349 374 IPR002885 -
Amo09g0020 671 Pfam PPR repeat 439 463 IPR002885 -
Amo09g0020 671 Pfam PPR repeat 246 272 IPR002885 -
Amo09g0020 671 Pfam PPR repeat family 375 421 IPR002885 -
Amo09g0020 671 Pfam PPR repeat family 88 132 IPR002885 -
Amo09g0020 671 Pfam PPR repeat family 173 218 IPR002885 -
Amo09g0020 671 Pfam PPR repeat family 303 343 IPR002885 -
Amo09g0020 671 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 344 665 - -
Amo09g0020 671 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 287 342 - -
Amo09g0020 671 Gene3D Tetratricopeptide repeat domain 172 250 IPR011990 GO:0005515
Amo09g0020 671 Gene3D Tetratricopeptide repeat domain 23 171 IPR011990 GO:0005515
Amo09g0020 671 Gene3D Tetratricopeptide repeat domain 251 343 IPR011990 GO:0005515
Amo09g0020 671 Gene3D Tetratricopeptide repeat domain 344 428 IPR011990 GO:0005515
Amo09g0020 671 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 173 288 - -
Amo09g0020 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Amo09g0020 671 Pfam E+ motif 548 575 IPR046849 -
Amo09g0020 671 SUPERFAMILY TPR-like 348 515 IPR011990 GO:0005515
Amo09g0020 671 Pfam E motif 482 543 IPR046848 -
Amo09g0020 671 PANTHER - 287 342 - -
Amo09g0020 671 PANTHER - 173 288 - -
Amo09g0020 671 TIGRFAM PPR: pentatricopeptide repeat domain 89 121 IPR002885 -
Amo09g0020 671 TIGRFAM PPR: pentatricopeptide repeat domain 173 206 IPR002885 -
Amo09g0020 671 TIGRFAM PPR: pentatricopeptide repeat domain 349 374 IPR002885 -
Amo09g0020 671 TIGRFAM PPR: pentatricopeptide repeat domain 274 304 IPR002885 -
Amo09g0020 671 TIGRFAM PPR: pentatricopeptide repeat domain 305 339 IPR002885 -
Amo09g0020 671 TIGRFAM PPR: pentatricopeptide repeat domain 377 411 IPR002885 -
Amo09g0020 671 PANTHER - 27 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0020 Amo-Chr9 266575 268749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0020 23 671 Glycoside Hydrolase AT3G49170 32.133 4.23e-119 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0020 - - gmx:100801078 1050.81