Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0018 ATGCATTTAAGAGGACTGCAAATGCGATCTTTGGGTGAAGTAGTTAAACTTGCTGAGAATCTTCCACACATACAATCCCTTTGTATTCATGAGATGATTACTAGAGCCTTTAAGCATCTACTTAAAGCTGTAATTGCCTCTGTTGACAATGTAGCAGACTTATCTGCCATCATTGCATCGACGCTGAATTTCTTACTCGGAGGATCTCAAACAGAGGATGCTGACCAAAATTTGGGTGATGACCATAATCTCAGATTTAAATGGTTAAATATATTTTTGTCCAAAAGATTTGGATGGACACTAAAGGATGAATTTCAACATTTGAGGAAGTTGTCAATTCTCAGAGGGCTCTGTCAAAAGGTAGGATTGGAATTGGTATCAAGAGATTATGACATGGAATCCTCCAAGCCTTTCAGCAAATATGATATTATCAGCCTAGTTCCTGTTTGCAAGCATGTAGGATGCTCCTCAGTTGACGGGCGTAATTTATTGGAATCGTCAAAAATCGCTCTTGATAAAGGAAAGCTTGAGGATGCTGTAAATTATGGAACTAAGGCGCTGGCAAAGATGATGACTGTTTGTGGACCTTATCATCGAACTACGGCTAGTGCATACAGTCTTCTAGCTGTGGTTCTCTACCACACTGGAGATTTTAACCAGGCCACCATATATCAGCAGAAGGCCTTGGACATAAAGAGAGGGAGCTTGGGCTTGATCATCCTGACACAATGA 732 0.4057 MHLRGLQMRSLGEVVKLAENLPHIQSLCIHEMITRAFKHLLKAVIASVDNVADLSAIIASTLNFLLGGSQTEDADQNLGDDHNLRFKWLNIFLSKRFGWTLKDEFQHLRKLSILRGLCQKVGLELVSRDYDMESSKPFSKYDIISLVPVCKHVGCSSVDGRNLLESSKIALDKGKLEDAVNYGTKALAKMMTVCGPYHRTTASAYSLLAVVLYHTGDFNQATIYQQKALDIKRGSLGLIILTQ* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0018 243 Pfam Tetratricopeptide repeat 171 233 - -
Amo09g0018 243 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 238 IPR027523 GO:0006996
Amo09g0018 243 SUPERFAMILY TPR-like 167 233 IPR011990 GO:0005515
Amo09g0018 243 CDD CLU-central 1 132 IPR033646 -
Amo09g0018 243 Pfam Translation initiation factor eIF3 subunit 135 1 131 IPR033646 -
Amo09g0018 243 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 238 - -
Amo09g0018 243 Gene3D Tetratricopeptide repeat domain 163 239 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0018 Amo-Chr9 246723 250867 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0018 K03255 - gmx:100801625 420.624