Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0012 ATGGGGGGAGCGTGTTCTAGGAAGCCCGAGCGGGATTACGAAGATAGTCCATGTAGAGGACTTTCACGAAGATTTTGCAAAAGTGGGAGTTTGAAATGGTGGACATCCTCGTTCGCTTATCCTTCTGTAGATTTCCATTTACGGAAAGGAGATTGTCCATCGCTGTTGGAGTTGTGCATCAAGAAAATAAATGAGCAATTTTTATTTCAACAGGATATTGACAGATATAATTCATTTTCTATGCTGCCTCGGGATATAAGTCAGCAAATTTTTAATAAATTGGTTTGTTCCCAACGCCTAACCAGCGTTTCCCTTGAAGCTTTTCGAGATTGTGCGCTTCAGGACCTTGACTTGGGAGAATATGCCGGTGTTAATGATTCTTGGATGGATGTCATCTCATCACAGGGTTCATCATTACTTTCCGTGGATCTTTCTGGGTCTGATGTCACTGATTTTGGGCTGAGTTACCTAAAATATTGTGAAAATCTCCTTTCCTTAAATCTAAATTACTGTGATCAAATCTCGGATCATGGACTGGAGTGCATCAGTGGTCTGTCAAACTTGACAAGTTTGAGCCTCAGAAGAAATGATTCAATATCTGCTCAAGGAATGAGTATCTTGTCTGGTCTTGTTAATTTAGTCAAGTTGGACTTGGAGAGATGTCCTGGGATTCATGGAGGCCTGGTTCACATTCAAGGTTTAACCAAGTTGCAATCACTCAATATTAAATGGTGCAATTGCATAACCGATTCTGATATGAAGCCTCTATCAGAGTTGGTGTGTTTGGAGAGTCTTGAGATTTCTTGCAGTAAAGTCACTAATTTTGGCATCAGCTTTCTAAAAGGATTGCAAAAGCTTTCCTTACTAAACTTGGAAGGGTGCCTTGTAACAGCTGCATGCTTGGATTCTCTTGCAGATCTTCCTCTCTTGTCAAACTTGAATCTTAATAGATGCAATATTACCGACGACGGCTGTGAAAAGTTTTCACGGCTGGAAAATTTGAAAGTACTCAACTTGGGATTTAATGATATTACTGATGCATGTTTAGCACACTTGAAAGTATTGACAAAGTTGGAGAGCTTGAACCTTGATTCATGTAGGATTGGTGATGAAGGGTTGATCAACTTGGCAGGCCATAGGCAACTGAAGTGCTTGGTATTGTCTGATACAGAAGTTGGAGATACTGGGTTACACCATTTGTCAGAATTTAAGAACCTGAGGTCCTTGGAGATATGTGGTGGAGGATTGACTGATGCCGGTGTGAAAAATATTAGAGCGCTTTCTTGTCTTATGTGCCTAAACTTATCACAAAACTGCAACCTTACGGACAAAAGCCTGGAATCAATTTCAGGGCTTACTCGATTAATCTCTTTGAATGTTTCAAATTCTCGCATCACCAACTCTGGTCTGCAGCATTTGAGAACACTGAAGAACTTGAGGTCTCTGACATTGGAATCCTGCAAGGTGACAGCATATGACATAAAGAAACTAAGATCAACACACCTCCCGAATCTGGTCAGCTTCCGGCCAGAATAG 1536 0.4095 MGGACSRKPERDYEDSPCRGLSRRFCKSGSLKWWTSSFAYPSVDFHLRKGDCPSLLELCIKKINEQFLFQQDIDRYNSFSMLPRDISQQIFNKLVCSQRLTSVSLEAFRDCALQDLDLGEYAGVNDSWMDVISSQGSSLLSVDLSGSDVTDFGLSYLKYCENLLSLNLNYCDQISDHGLECISGLSNLTSLSLRRNDSISAQGMSILSGLVNLVKLDLERCPGIHGGLVHIQGLTKLQSLNIKWCNCITDSDMKPLSELVCLESLEISCSKVTNFGISFLKGLQKLSLLNLEGCLVTAACLDSLADLPLLSNLNLNRCNITDDGCEKFSRLENLKVLNLGFNDITDACLAHLKVLTKLESLNLDSCRIGDEGLINLAGHRQLKCLVLSDTEVGDTGLHHLSEFKNLRSLEICGGGLTDAGVKNIRALSCLMCLNLSQNCNLTDKSLESISGLTRLISLNVSNSRITNSGLQHLRTLKNLRSLTLESCKVTAYDIKKLRSTHLPNLVSFRPE* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0012 511 Gene3D Ribonuclease Inhibitor 227 297 IPR032675 -
Amo09g0012 511 Gene3D Ribonuclease Inhibitor 130 226 IPR032675 -
Amo09g0012 511 Gene3D Ribonuclease Inhibitor 413 507 IPR032675 -
Amo09g0012 511 PANTHER UNCHARACTERIZED 2 435 - -
Amo09g0012 511 Pfam Leucine Rich repeat 186 205 IPR001611 GO:0005515
Amo09g0012 511 Pfam Leucine Rich repeat 160 183 IPR001611 GO:0005515
Amo09g0012 511 Pfam Leucine Rich repeat 235 257 IPR001611 GO:0005515
Amo09g0012 511 PANTHER UNCHARACTERIZED 426 468 - -
Amo09g0012 511 SUPERFAMILY L domain-like 129 443 - -
Amo09g0012 511 PANTHER LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED RECEPTOR 4-LIKE 2 435 - -
Amo09g0012 511 Pfam Leucine rich repeat 309 368 IPR001611 GO:0005515
Amo09g0012 511 Pfam Leucine rich repeat 405 465 IPR001611 GO:0005515
Amo09g0012 511 ProSiteProfiles Leucine-rich repeat profile. 333 353 IPR001611 GO:0005515
Amo09g0012 511 PANTHER LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED RECEPTOR 4-LIKE 426 468 - -
Amo09g0012 511 Gene3D Ribonuclease Inhibitor 298 412 IPR032675 -
Amo09g0012 511 SMART LRR_CC_2 307 331 IPR006553 -
Amo09g0012 511 SMART LRR_CC_2 403 427 IPR006553 -
Amo09g0012 511 SMART LRR_CC_2 355 379 IPR006553 -
Amo09g0012 511 SMART LRR_CC_2 234 259 IPR006553 -
Amo09g0012 511 SMART LRR_CC_2 160 185 IPR006553 -
Amo09g0012 511 SMART LRR_CC_2 186 210 IPR006553 -
Amo09g0012 511 SMART LRR_CC_2 452 476 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0012 Amo-Chr9 168590 176924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0012 229 466 Receptor kinase-like Gene Family AT1G75820 26.250 1.75e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0012 - - gmx:100800666 666.766