Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0011 ATGTCTTCTCTTAGTAGAGAATTGGTGTTCTTGATCTTGCAGTTTCTGGATGAGGAAAAGTTCAAGGAGACTGTTCACAAGCTTGAACAGGAGTCTGGATTTTTCTTCAATATGAAGTACTTTGAGGATGAAGTGCACAATGGCAATTGGGATGAGGTTGAAAAGTACCTTTCTGGTTTCACTAAGGTAGATGATAATAGATATTCTATGAAGATATTTTTTGAGATAAGGAAACAGAAGTATCTTGAGGCATTGGATAAGCATGACCGGTCCAAGGCTGTAGAAATCTTAGTAAAGGATTTGAAAGTGTTTGCTACTTTTAATGAAGAATTGTTCAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGGAAAATGAGCAATTGTCTAAGTATGGTGATACAAAATCTGCTAGAGCAATCATGTTGGTTGAGCTCAAAAAGCTCATTGAAGCGAATCCTTTGTTTCGTGATAAGTTGCAATTTCCCAACCTTAAGAACTCAAGGTTACGGACTCTCATCAATCAAAGCTTGAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCTGATATAAAAACTCTTTTTGTGGATCACTCTTGTGGACAACCAAATGGTGCACGAGCTCCTTCACCTGCAAATAATCCGCTATTAGGGTCCTTACCAAAGGCCGGAGCATTTCCTCCTCTCGGTGCACATGGGCCTTTTCAACCTACTCCAGCACCAGTGCCGACACCCCTGGCTGGGTGGATGTCAAATCCTACCACTGTGGCACATCCTGCAGTTTCTGGAGGTGGAGCTATAGGTCTTGGTGCTCCATCAATCCCTGCTGCTTTGAAGCATCCAAGGACTCCTCCAACTAATCCCTCTGTTGATTACCCATCTGGAGACTCAGATCATGTTGCTAAGAGAACTAGACCAATGGGAATATCCGAGGAGGTAAATCTACCCGTCAATGTGTTGTCGGCAACATTCCCTGGTCATGGTCACGGTCATGGTCATAGTCAAGCTTTTACGGCACCTGATGACTTGCCGAAGACTGTCGTGCGAACTTTGAATCAGGGTTCATCTCCCATGAGCATGGACTTCCATCCTGTGCAACAGTCTTTACTTCTTGTTGGCACTAATGTTGGGGACATCGCTTTGTGGGAGGTGGGGTCTAGGGAGCGGTTGGTCTTGAGGAATTTCAAAGTTTGGGACCTTAGTGCATGTTCAATGCCATTTCAGGCTGCACTCGTCAAAGATCCTGGCGTTTCTGTCAACCGAGTGATTTGGAGTCCTGATGGTGCTTTATTCGGAGTTGCTTATTCAAGACATATTGTTCAAATATACTCTTATAATGGCGGGGATGATGTGAGGCAGCACCTTGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTTGCATTTTCGCATCCAAATAAGCAACTATGTGTGATAACCTGTGGTGATGATAAGACCATTAAGGTGTGGGATGCTGCTACGGGTACTAAGCAGTATACTTTTGAGGGCCATGAAGCTCCAGTATATTCTGTATGCCCACATTATAAAGAAAACATTCAGTTTATTTTTTCAACGGCATTAGATGGAAAGATAAAAGCATGGCTGTATGACAATTTGGGATCTCGTGTTGATTATGATGCACCTGGTCGTTGGTGCACCACCATGGCTTATAGTGCTGATGGAACAAGGCTCTTTTCGTGCGGGACAAGCAAAGATGGGGAATCCTCTATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTCAAAAGGACTTATCAAGGATTCCGTAAGCGGTCTTTGGGTGTTGTGCAATTTGATACCACCAAAAATAGATTTTTGGCTGCTGGTGATGATTTCTCCATAAAATTCTGGGACATGGACAATGTTCAGCCTCTGCAAGCCATCGATGCTGATGGGGGTCTTCCTGCAAGCCCACGTATCCGATTCAACAAGGATGGAACACTTCTAGCCGTCTCTGCGAATGAGAATGGAATCAAAATTTTAGCCAATGCAGATGGTATGCGTTTGTTGCGCACATTAGAGAATTCTTTATATGATGCATCACGAACATCAGAAGCCATGGCAAAGCCTTCCATAAATCCAATTTCTGCTGCTGCTGCCGCAGCGACTAGTGCTGCACTTGCAGAGAGGGCCTCTTCTGTAGTAGCAATTCCCGGAATGAATGGGGATGCACGGAACTTAGGTGATGTTAAGCCTAGAATAAGTGAAGAATCCAATGACAAGTCAAAAATATGGAAGCTCACTGAAATAAATGAACCGTCTCAGTGTAGATCCTTGAAGTTACCAGACAATGTGAGAGTACCAAAGATATCAAGGTTGATATATACAAACTCTGGTAATGCTGTTCTTGCATTAGCATCAAATGCTATTCACCTTCTCTGGAAATGGCAGCGAAATGACCGTAACTCATCTGGCAAGGCCACTGCCAGCATGCAACCTCAATTGTGGCAACCATCGAGTGGCATTCTCATGACTAATGACATTGCCGATAGTAGTCCCGAAGATGCTGTTCCATGCTTTGCTCTGTCCAAAAATGATTCTTATGTAATGTCCGCCTCAGGAGGGAAGATATCCCTTTTCAATATGATGACTTTTAAGACAATGACGACATTCATGCCTCCACCACCTGCAGCAACCTTTCTTGCTTTTCATCCTCAGGATAACAACATTATTGCCATAGGCATGGATGATTCCTCCATTCAAATATATAATGTCCGCGTAGACGAGGTTAAAAGTAAACTCAAGGGTCATACTAAAAGAATAACTGGTCTTGCTTTCTCTCACGTATTGAATGTGCTAGTTTCATCTGGGGCAGATGCCCAGATTTGTGTGTGGAATACTGATGGATGGGAAAAGCAGAAGAGTAGATTCTTGCAGCTTCCTCCCGGGAGGACTCCGTCAGCGCAGGCAGATACGCGTGTACAGTTTCATCAGGATCAGATACATTTCTTGGTTGTACATGAAACTCAGCTAGCCATTTATGAAGCAACAAAGCTAGAATGTTTGAAGCAGTGGTTCCCGCGAGATTCAGCTGCACCAATATCGCATGCGACTTTCTCGTGTGATAGTCAGCTGATATATGCCAGCTTTTTAGATGCAACAGTCTGTGTATTTAGTGCTTCAAACCTCAGATTACGATGTCGAATCAATCCGTCTGCTTATCTTTCAGGAAGCGTCAGTTCCAACGTACAACCGCTTGTAATTGCGGCGCATCCGCAAGAACCGAATCAGTTTGCAATAGGGCTGTCAGACGGCGGAGTTCACGTGTTTGAGCCGCTTGAATCGGAAGGCAAGTGGGGTGTGCCTCCACCAGTTGAGAATGGTTCAGCAAGCAATGTGGCAGCTCCATCAGTTGGAGGACCCTCTTCAGATCAACCTCAAAGATGA 3417 0.441 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGAFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHPAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVAKRTRPMGISEEVNLPVNVLSATFPGHGHGHGHSQAFTAPDDLPKTVVRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVLRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYNGGDDVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGTKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQPLQAIDADGGLPASPRIRFNKDGTLLAVSANENGIKILANADGMRLLRTLENSLYDASRTSEAMAKPSINPISAAAAAATSAALAERASSVVAIPGMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPDNVRVPKISRLIYTNSGNAVLALASNAIHLLWKWQRNDRNSSGKATASMQPQLWQPSSGILMTNDIADSSPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPSAQADTRVQFHQDQIHFLVVHETQLAIYEATKLECLKQWFPRDSAAPISHATFSCDSQLIYASFLDATVCVFSASNLRLRCRINPSAYLSGSVSSNVQPLVIAAHPQEPNQFAIGLSDGGVHVFEPLESEGKWGVPPPVENGSASNVAAPSVGGPSSDQPQR* 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0011 1138 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 925 1108 - -
Amo09g0011 1138 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1138 IPR027728 GO:0006355
Amo09g0011 1138 SMART Lish 4 36 IPR006594 GO:0005515
Amo09g0011 1138 Gene3D - 333 547 IPR015943 GO:0005515
Amo09g0011 1138 ProSiteProfiles Trp-Asp (WD) repeats profile. 924 965 IPR001680 GO:0005515
Amo09g0011 1138 ProSiteProfiles Trp-Asp (WD) repeats profile. 461 504 IPR001680 GO:0005515
Amo09g0011 1138 MobiDBLite consensus disorder prediction 1120 1138 - -
Amo09g0011 1138 Gene3D - 780 1109 IPR015943 GO:0005515
Amo09g0011 1138 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Amo09g0011 1138 SMART WD40_4 348 387 IPR001680 GO:0005515
Amo09g0011 1138 SMART WD40_4 1008 1049 IPR001680 GO:0005515
Amo09g0011 1138 SMART WD40_4 542 585 IPR001680 GO:0005515
Amo09g0011 1138 SMART WD40_4 454 495 IPR001680 GO:0005515
Amo09g0011 1138 SMART WD40_4 588 628 IPR001680 GO:0005515
Amo09g0011 1138 SMART WD40_4 834 871 IPR001680 GO:0005515
Amo09g0011 1138 SMART WD40_4 917 956 IPR001680 GO:0005515
Amo09g0011 1138 SMART WD40_4 498 539 IPR001680 GO:0005515
Amo09g0011 1138 SMART WD40_4 1058 1101 IPR001680 GO:0005515
Amo09g0011 1138 SMART WD40_4 409 448 IPR001680 GO:0005515
Amo09g0011 1138 SMART WD40_4 874 914 IPR001680 GO:0005515
Amo09g0011 1138 Pfam WD domain, G-beta repeat 461 495 IPR001680 GO:0005515
Amo09g0011 1138 Pfam WD domain, G-beta repeat 923 956 IPR001680 GO:0005515
Amo09g0011 1138 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Amo09g0011 1138 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 471 961 IPR011047 -
Amo09g0011 1138 SUPERFAMILY WD40 repeat-like 350 538 IPR036322 GO:0005515
Amo09g0011 1138 ProSiteProfiles Trp-Asp (WD) repeats profile. 606 637 IPR001680 GO:0005515
Amo09g0011 1138 ProSitePatterns Trp-Asp (WD) repeats signature. 482 496 IPR019775 -
Amo09g0011 1138 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 924 956 - -
Amo09g0011 1138 MobiDBLite consensus disorder prediction 1104 1138 - -
Amo09g0011 1138 SMART ctlh 34 92 IPR006595 -
Amo09g0011 1138 Gene3D - 548 698 IPR015943 GO:0005515
Amo09g0011 1138 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 1138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0011 Amo-Chr9 159624 167429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0011 459 672 Miscellaneous Gene Families AT5G08390 23.853 2.41e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0011 - - gmx:100795759 2142.85