Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2479 ATGGCACCAACTGTACCAATAGACTTTGCTGGGCAAAAGCAATCCAGGTTGTACTCTCACTCACAGACAATGGGCAAGTCTAGGAAATACTCCAAAGGCTTTTCTACTGGATTTGTTCCGGATTTCCGACATGCGGTGGAGACTATGGGTGAATCAGAGGGGTTGGGTAGCTCCGGACGGGTTGATATGGAACTGACAGCTTCGGCAAATTCTTTTGCGCCAAAGAGGAAATGCATTGGATTGATTGCTGATGGTTATGGTGATTTTGATGTGCCATTCCAGCATTTCAAATTGTCAAAGATGTCAGATTTCGAGAGGAAGGACTTGAAACAGAGGTTAGCACGGGAGCTTGAACGTGTAAGGGAACTTCAGAAGAAAGTTGATGGTATGAAGCCGAATGTTGTTGCATTAACTTCCCCTGGCGATATTAGGGGCTGCAGTGCGGGACAGAAAAGACCTCAGCCGGAGAGCAAGTATAGAACACAAGAAGCATCGGTGCCACAGGGTAAGAAAAGGCCCTTACCAGGACATAACGGTCCAAAGACCAAAAAAAGTATGTCTGGGCAGTTTGAGCATGCAAAACCTGCTGATTCTTCATTAGCTGCATTGATGAAACCTTGCGAGACATTACTTAACCGGTTGATGTCCCATCAGTTTAGTTGGGTTTTTAACACACCAGTTGATGTTGTTAAATTGAACATTCCGGATTATTTCAATGTCATCAAACATCCCATGGATTTGGGTACAGTGAAGAATAGAATAACGTCTGGTAAATATTCAAGTCCTATGGAGTTTGCTGCAGATGTACGGCTAACTTTTTCAAACGCAATGACTTATAATCCTCCTGGGAATGATGTACACCTCATGGCAGAGACTCTTAGTAAGATGTTTGAAACGAAATGGAAGCCGATAGAGAAGAAACTTCCTGCCATGAACAGTGCTCGTTCTGAGCCATCAAAGCCAACTGCTTATGTAGAAACTGGAAATTTTAACCAAATTCCTCCCATGAAAAAGAATAAAATTACCCCGAAAGAAACTAAAGTGAAACCAGAGCCTGTTAAAAGAACCATGAGTGATGAGGAGAAGCATAAATTGAGTATGGAGTTGGAGGCAATGCTTGGAGAGTTGCCCGAAACCATTGTTGACTTCTTGAAAGAGCAAAGTTATGGTTCAGGTCAGGCCAATGATGATGAGATTGAGATTGACATTGATGCCCTAAGTGATGATACCTTATTCAAATTGCGGAAGCTTCTTGATGATTATGTGCTGGAGAAGCAAAAATCCATGGCCAAAGCGAGACAGAGTGAAATGGAGCTTGTGAATGAATCTGGGTTTAGCAACTCGTCAATGCAACCACCTAAAGGTAATGATCAAGTTGAGGAGGATGTGGACATTGTTGGTGTGAATGATCCTCCTGTATCAAATTATCCTCCAGTAGAGATTGAGAAAGATGGTGCCAACAGAAACACTAAATGCAGCAGTTCAAGTAGCTCCAGTAGTGAATCTGGCTCTTCTTCCAGTGATTCAGACTCAGCTAGTTCCTCGGCTAGTGAGTTAGACACTGCCAAATCCCCAGAACCTCCTAGTGCCAAGGAAAATGTAGGGCCTGTCTTTATTTCCAATCAAAACAGACAGGATCCTGGTAATTCTGAGTCCGAAATGGATTCAATTAATGTGGATGGCCAAGCCGAAAAGGATTCGCAGACCAAACTAGTGACTACTGAGCCAGAAAGCCTTCAAGAGGGGGAGAGTGCTCCACCTCAGAGGCAAGTCTCTCCCGACAAGCTCTACCGGGCAGCTTTACTAAGGAGCCGGTTTGCTGACACTATTCTTAAAGCTCGAGAGAAGGCTCTTGAAAAGGCCGAAAAGCAGGATCCAGAAAAACTTAGGATGGAGAGAGAAGAACTTGAAAGGAGGCAGAAGGAAGAGAAAGCACGGTTGCAGGCAGAGGCAAAAGCTGCAGAAGAGGCTCGGAGGAAAGCTGAAGCAGTAGCTGCAGCTGAAGCTAAGAAGAAGAGGGAACAGGAGAGAGAAGCAGCTCGGTTGGCATTGCAAAAGATGGAGAAAACTGTTGACATCAATGAGGGCAGTCAATTTTTGGAAGATCTGGAGTTGCTGAGTGCTGTACAAGGTGAACAGTTCCCAAGCTACATAGAAGAGGCGAGCCCAGATCCTCTACAAAGTAGATTGGGTAGTTTCAAGCTACAGGGAAATCCTTTAGAACAGCTAGGATTGTATATGAAGGACGATGATGAGGATTTGGATGAAGAACTGCCTCAGGGTGCTGCAGGACAACCAAAAGATGAAGAGACGGCTAGTGCTGCTCCTGGTGAACAGTTACCAATTTTCAAAGACGAGACAAATCCAGATCATCCTGAAAGTGGATTGGATAGCTCCAAACAGGAGGGTAATCCCTTAGAGCAGTTGGGATTATACATGAAGGATGATGATGAAGATTTGGAGGAACAACCATCTCAACGTGCTGCTGGGAAATCAAATGATGTTGAAGAAGGAGAAATTGACTGA 2526 0.4438 MAPTVPIDFAGQKQSRLYSHSQTMGKSRKYSKGFSTGFVPDFRHAVETMGESEGLGSSGRVDMELTASANSFAPKRKCIGLIADGYGDFDVPFQHFKLSKMSDFERKDLKQRLARELERVRELQKKVDGMKPNVVALTSPGDIRGCSAGQKRPQPESKYRTQEASVPQGKKRPLPGHNGPKTKKSMSGQFEHAKPADSSLAALMKPCETLLNRLMSHQFSWVFNTPVDVVKLNIPDYFNVIKHPMDLGTVKNRITSGKYSSPMEFAADVRLTFSNAMTYNPPGNDVHLMAETLSKMFETKWKPIEKKLPAMNSARSEPSKPTAYVETGNFNQIPPMKKNKITPKETKVKPEPVKRTMSDEEKHKLSMELEAMLGELPETIVDFLKEQSYGSGQANDDEIEIDIDALSDDTLFKLRKLLDDYVLEKQKSMAKARQSEMELVNESGFSNSSMQPPKGNDQVEEDVDIVGVNDPPVSNYPPVEIEKDGANRNTKCSSSSSSSSESGSSSSDSDSASSSASELDTAKSPEPPSAKENVGPVFISNQNRQDPGNSESEMDSINVDGQAEKDSQTKLVTTEPESLQEGESAPPQRQVSPDKLYRAALLRSRFADTILKAREKALEKAEKQDPEKLRMEREELERRQKEEKARLQAEAKAAEEARRKAEAVAAAEAKKKREQEREAARLALQKMEKTVDINEGSQFLEDLELLSAVQGEQFPSYIEEASPDPLQSRLGSFKLQGNPLEQLGLYMKDDDEDLDEELPQGAAGQPKDEETASAAPGEQLPIFKDETNPDHPESGLDSSKQEGNPLEQLGLYMKDDDEDLEEQPSQRAAGKSNDVEEGEID* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2479 841 SUPERFAMILY Bromodomain 197 309 IPR036427 GO:0005515
Amo08g2479 841 Coils Coil 106 126 - -
Amo08g2479 841 MobiDBLite consensus disorder prediction 741 841 - -
Amo08g2479 841 Coils Coil 630 690 - -
Amo08g2479 841 Gene3D - 350 429 IPR038336 -
Amo08g2479 841 MobiDBLite consensus disorder prediction 310 338 - -
Amo08g2479 841 MobiDBLite consensus disorder prediction 433 594 - -
Amo08g2479 841 CDD Bromo_plant1 203 301 IPR037377 -
Amo08g2479 841 Pfam Bromodomain extra-terminal - transcription regulation 357 419 IPR027353 -
Amo08g2479 841 MobiDBLite consensus disorder prediction 535 587 - -
Amo08g2479 841 ProSiteProfiles NET domain profile. 347 429 IPR027353 -
Amo08g2479 841 Gene3D - 177 317 IPR036427 GO:0005515
Amo08g2479 841 MobiDBLite consensus disorder prediction 618 654 - -
Amo08g2479 841 MobiDBLite consensus disorder prediction 315 336 - -
Amo08g2479 841 PANTHER TRANSCRIPTION FACTOR GTE8 25 759 - -
Amo08g2479 841 PANTHER TRANSCRIPTION FACTOR GTE8 772 825 - -
Amo08g2479 841 MobiDBLite consensus disorder prediction 439 455 - -
Amo08g2479 841 MobiDBLite consensus disorder prediction 488 522 - -
Amo08g2479 841 PRINTS Bromodomain signature 218 231 IPR001487 GO:0005515
Amo08g2479 841 PRINTS Bromodomain signature 234 250 IPR001487 GO:0005515
Amo08g2479 841 PRINTS Bromodomain signature 250 268 IPR001487 GO:0005515
Amo08g2479 841 PRINTS Bromodomain signature 268 287 IPR001487 GO:0005515
Amo08g2479 841 SMART bromo_6 196 306 IPR001487 GO:0005515
Amo08g2479 841 MobiDBLite consensus disorder prediction 138 194 - -
Amo08g2479 841 Pfam Bromodomain 207 291 IPR001487 GO:0005515
Amo08g2479 841 PANTHER TRANSCRIPTION FACTOR GTE10 772 825 - -
Amo08g2479 841 PANTHER TRANSCRIPTION FACTOR GTE10 25 759 - -
Amo08g2479 841 ProSiteProfiles Bromodomain profile. 215 287 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2479 Amo-Chr8 38638305 38645396 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2479 - - adu:107478848 1493.02