Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2388 GTAAAAAATTTTTCGATTGATGCTTGCCATGGTGAATCTTTTTGTTTGTTAATAGATATTCTGTTTTTCAAGTGTGTTACTTGTTGCTTAATATTCTTCATAAAAATTGCAGCCAGCTATTCAGGAATCATGGCTAGGGTTTTGGCTCAGTCAGTTAATGTCCCTGGTCTAGTGGCCGGGCATCGGCGTGGCCAACATAAGGGATCAGGAAAATCCAGAAGATCTGTCAAAATGATGTGTGCTTTACGAACAAATGGACTAAGAATGGCAGGTTTTTCAGGACTACGTACAGTTAATCCTTTGGATACTATGTTGAGACCTGGACTGGATTTTCACTCGAAGGTGTCAATTGCAACTTCTTCACGGCGAGCAAAGCCTATCAGAGGTGTTCCTAAAGCCATGTTTGAGCGTTTCACAGAAAAAGCAATCAAGGTGATTATGCTTGCCCAGGAGGAAGCAAGACGTCTTGGTCACAATTTTGTTGGAACAGAGCAGATTCTTTTGGGTCTTATTGGTGAGGGCACTGGTATTGCCGCTAAGGTTCTGAAGTCTATGGGAATCAACCTTAAAGATGCACGTGTTGAAGTGGAGAAGATAATAGGAAGGGGTAGTGGGTTTGTAGCTGTTGAGATTCCATTTACTCCTCGTGCAAAACGTGTTTTGGAACTCTCATTAGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCTGAGCACTTGCTTCTGGGTCTTCTTCGTGAGGGTGAAGGTGTAGCAGCACGTGTTATTCGCATGGTTGGTGAGAGTGCTGACAGTGTTACTGCAACTGTTGGGTCAGGAAGTAGTGGCAATAAGATGCCAACATTGGAGGAGTATGGCACCAATTTAACCAAGTTAGCAGAGGAGGGAAAATTGGATCCAGTTGTGGGAAGGCAGCCACAAATAGAACGTGTCACTCAAATTTTGGGTCGTCGCACCAAAAATAACCCTTGTCTTATTGGAGAACCCGGTGTTGGTAAGACAGCAATTGCTGAAGGTCTTGCTCAGAGGATTGCAAATGGTGATGTACCTGAAACCATAGAGGGAAAAAAGGTTATAACCCTTGATATGGGTTTGCTTGTTGCTGGAACTAAATATCGTGGTGAGTTTGAGGAGAGGTTGAAGAAACTGATGGAGGAAATTAAACAAAGTGATGAGATAATACTTTTTATCGATGAAGTGCACACCCTAATTGGAGCTGGAGCAGCTGAAGGGGCTATTGATGCTGCTAACATACTAAAACCTGCTCTTGCAAGGGGTGAACTGCAGTGTATTGGAGCCACAACACTTGATGAATACCGGAAACACATTGAAAAAGATCCAGCTTTGGAGAGACGATTCCAGCCAGTTAAGGTGCCGGAGCCAACTGTAGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGCTATGAAATTCACCACAAGCTTCGGTATACTGATGAGGCTCTTGTAGCTGCTGCACAGCTGTCTTACCAATATATCAGTGATCGATTTTTGCCAGACAAAGCTATAGATCTTATTGATGAAGCTGGTTCACGTGTCCGGCTGCAACACGCACAGTTGCCTGAAGAAGCAAGAGAACTTGACAAGGAACTCAGGCAGATTGTTAAGGAGAAAGAAGAAGCTGTTCGCAACCAAGACTTTGAGAAGGCTGGAGAACTACGAGATAGAGAAATGGATCTTAAGGCACAAATATCAACACTTGTAGAGAAAGGCAAGGAGATGAGCAAGGCAGAGAGTGAAGCAGGAGACTCAGGTCCCATTGTGACGGAAGTTGACATACAACATATTGTCTCCTCTTGGACTGGTATCCCTGTTGAGAAAGTCTCAACCGATGAATCCGATCGCCTCCTTAAGATGGAGGAGACATTGCACAAGCGTGTCATTGGTCAGGATGAAGCAGTGAAAGCAATTAGCCGAGCTATTCGTCGAGCCCGGGTTGGATTGAAAAACCCTAATCGTCCAATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTCGGGAAGTCTGAATTGGCGAAAGCATTGGCTGCATATTACTTTGGCTCTGAAGAAGCCATGATTCGGCTAGACATGAGTGAATTCATGGAGAGGCACACCGTCTCTAAACTCATAGGTTCGCCTCCTGGATATGTTGGTTACACCGAAGGTGGCCAACTGACTGAAGCAGTTCGGCGTCGTCCTTACACTGTTGTGCTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGTAGACTTACAGATAGCAAGGGAAGAACCGTGGATTTCAAGAACACGCTTCTCATAATGACGTCGAATGTTGGAAGCAGTGTAATTGAGAAAGGAGGCCGGAAAATAGGATTTGATCTGGATTACGATGAGAAGGACAGCAGCTACAACCGAATCAAGAGCTTGGTGACCGAGGAGCTAAAACAATACTTCAGGCCAGAGTTCTTGAACAGGCTGGATGAAATGATTGTCTTCAGGCAACTCACAAAACTCGAGGTGAAGGAGATTGCTGACATAATGCTAAAGGAGGTGTTTGACAGACTAAAGACCAAAGATATCGAACTTCAAGTGACGGAAAGATTTAGAGACAGAGTAGTTGAGGAAGGTTACAACCCTAGCTATGGAGCTAGGCCTCTAAGGAGAGCCATAATGAGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTTGCTAGAGAGATCAAAGAAGGTGACTCTGTGATAGTTGATGTTGATGCTGATGGCAATGTGATTGTTCTCAATGGTAGCAGTGGTACTCCAGAGTCCTTGCCAGAGGAGGCTCTTCCTGTATAA 2856 0.4447 VKNFSIDACHGESFCLLIDILFFKCVTCCLIFFIKIAASYSGIMARVLAQSVNVPGLVAGHRRGQHKGSGKSRRSVKMMCALRTNGLRMAGFSGLRTVNPLDTMLRPGLDFHSKVSIATSSRRAKPIRGVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVIRMVGESADSVTATVGSGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKELRQIVKEKEEAVRNQDFEKAGELRDREMDLKAQISTLVEKGKEMSKAESEAGDSGPIVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDADGNVIVLNGSSGTPESLPEEALPV* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2388 951 ProSitePatterns Chaperonins clpA/B signature 1. 415 427 IPR018368 GO:0005524
Amo08g2388 951 CDD AAA 637 785 - -
Amo08g2388 951 Pfam AAA domain (Cdc48 subfamily) 662 836 IPR003959 GO:0005524|GO:0016887
Amo08g2388 951 Gene3D UVR domain 529 593 - -
Amo08g2388 951 Pfam C-terminal, D2-small domain, of ClpB protein 843 923 IPR019489 -
Amo08g2388 951 Gene3D - 843 940 - -
Amo08g2388 951 ProSiteProfiles Clp repeat (R) domain profile. 135 278 IPR004176 -
Amo08g2388 951 Gene3D - 615 841 IPR027417 -
Amo08g2388 951 Gene3D - 134 273 IPR036628 -
Amo08g2388 951 Pfam AAA lid domain 463 564 IPR041546 -
Amo08g2388 951 Gene3D - 465 609 - -
Amo08g2388 951 ProSiteProfiles UVR domain profile. 537 572 IPR001943 GO:0005515
Amo08g2388 951 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 774 788 IPR001270 GO:0005524
Amo08g2388 951 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 712 730 IPR001270 GO:0005524
Amo08g2388 951 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 741 759 IPR001270 GO:0005524
Amo08g2388 951 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 667 685 IPR001270 GO:0005524
Amo08g2388 951 Gene3D - 274 463 IPR027417 -
Amo08g2388 951 PANTHER ATP-DEPENDENT CLP PROTEASE 119 950 - -
Amo08g2388 951 Coils Coil 374 394 - -
Amo08g2388 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 559 IPR027417 -
Amo08g2388 951 Coils Coil 533 553 - -
Amo08g2388 951 SMART ClpB_D2_small_2 843 933 IPR019489 -
Amo08g2388 951 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 119 950 - -
Amo08g2388 951 Pfam ATPase family associated with various cellular activities (AAA) 325 441 IPR003959 GO:0005524|GO:0016887
Amo08g2388 951 CDD AAA 303 455 - -
Amo08g2388 951 Pfam Clp amino terminal domain, pathogenicity island component 149 201 IPR004176 -
Amo08g2388 951 Pfam Clp amino terminal domain, pathogenicity island component 225 270 IPR004176 -
Amo08g2388 951 SMART AAA_5 320 460 IPR003593 -
Amo08g2388 951 SMART AAA_5 663 844 IPR003593 -
Amo08g2388 951 SUPERFAMILY Double Clp-N motif 136 270 IPR036628 -
Amo08g2388 951 ProSitePatterns Chaperonins clpA/B signature 2. 697 715 IPR028299 -
Amo08g2388 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 929 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2388 Amo-Chr8 37504266 37509560 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2388 K03696 - gmx:100804035 1669.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo03g2630 03 114280041 114285906 Amo08g2388 08 37504266 37509560 PCT
Amo08g2388 08 37504266 37509560 Amo03g2630 03 114280041 114285906 PCT