Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2373 ATGTGTGTCTGTGTTTTCCTTGTACTTGGTTTTTTCATGATGGTGGCTACTTCGACAATGGAGAGTCTACTGTGTTCCTGTTTGTGTGTTTTGGTGTTGTTGGGGTGTTTGATTTCATCAACGGAATCAAAGTACATAAAGTACAACACAAGTTCAAACATTGTTCCTGGGAAGCTGAATGTTCACTTGGTTGCTCACACTCATGATGATGTTGGTTGGTTGAAGACCGTTGATCAGTACTATGTCGGTTCCAATAACTCAATCCAGGGAGCGTGCGTTCAAAATGTGCTGGATTCGCTTGTGCCAGCATTGTTGGCGGACAAGAATCGCAGGTTTATATATGTTGAACAGGCATTTTTCCAGCGTTGGTGGAGAGAACAAAGTGAAGCTGTTCAGAACATAGTCAAACAGCTGGTCAACTCTGGTCAATTGGAGTTCATAAATGGGGGCATGGTTATGCATGATGAGGCTACTACACATTACATTGACATGATTGATCAAACAACACTTGGACACCATTTCATCAAAGAAGAATTTGGTAAAACCCCAAGAATAGGATGGCAAATCGATCCGTTTGGACATTCGGCGGTGCAGGCATACTTGTTGAGTGCACAGGTTGGGTTTGATTCCCTATTCTTTGCGCGGATCGATTACCAAGACAGAGCTAAGAGGAAAGATGAAAAATCTCTTGAAGTTGTGTGGCAGGCCTCTAAGAGCCTTGGTTCATCTCAACAAATATTTTCAGGTGCATTCCCTAAGAACTATGAACCTCCTGCTAATTTCTACTACGAAGTAAATGATGATTCTCCAATTGTACAGGATGATGTCAATTTGTTTGACTACAATGTCCCTGAACGTGTAAATGAGTTCGTRGCAGCAGCGATSTCTCAGGCGAATATTACGCGAACCAATCATATAATGTGGACAATGGGGACAGATTTCAAGTACCAATATGCACATACCTGGTTTCGCCAATTGGATAAGTTTATTCACTATGTTAATCAAGATGGCCGGGTTCATGCCCTCTACTCAACCCCATCGATATATACTGATGCGAAACATGCTGCTAATGAGGCCTGGCCAATCAAGACAGAAGACTACTTTCCGTATGCTGATGTGGAAAATGGCTATTGGACGGGGTATTTTACAAGTAGGCCAGCTATCAAAGGCTATGTTAGATTCTCAAGTGGCTACTACTTGGCAGCAAGGCAGTTAGAGTATTTTAAAGGGAAGAGTGGCTTAGGTCCAAAAACTGATTCTTTGGCTGATGCTTTGGCTATTGCTCAACACCACGACGCAGTATCCGGTACAGAAAAGCAGCATGTGGCTAATGATTATGCGAAACGGCTTTCAATAGGCTATACAGAGGCTGAGAAGGTTGTTGCAGCATCACTTTCTTACTTGACAGATGCACCAAAAACTGGTCGTCAGATTAAATTTCAACAGTGTCCACTTCTGAACATAAGTTATTGTCCTGCGTCGGAAACTGACTTCTCGAATGGAAAAGACCTGGTTGTAGTTGTTTACAATCCACTTGGATGGAAAAGAGAGGATGTAATAAGGATCCCTGTTGTAAGCGAATATGTTGTTGTTCGAGATTCAAGTGGAAAACAAATCCAATCACAGCTGCTACCAATACTTGATACTTTTATTGGTTTGAGAAAGTACTACACTGCAGCATACCTGGGAGTATCTTCAACTGTAAAACCTAAATACTGGCTTGCATTTTCGGCTACTGTCCCGCCACTCGGTTTTAGCACTTACTATGTATCTAAAGCTAAACAAGCAGCTACTATTTCAGATACATATACACCATACAAATCAAGGAATCAGAAGGATACAATTGAAGTTGGTCCAGGAAACTTGAAACTGATTTATTCCGAGAAGGAAGCAAAACTCACTGAATACATCAACAGCAAAAGCAAGGTCAAAGAATCCATAGACCAGGCATACAAATATTATTCTTCATATGGAGATGATGGAACACAAACTTCTCAGCCTTCCGGTGCATATATTTTTCGCCCCAATGGTTCATCAGTTCCAATCAAATCAGACAGAAAGTCTCCTCTCACAGTCTTCCGGGGGCCAATTGTGCATGAAGTTCATCAGAAGATTAGCTCATGGATATACCAGATCACTAGACTGCACAAAGGGAAAGAGCATGCTGAGGTCGAGTTTATTGTTGGACCTATACCTACTGATGATGGAGTTGGTAAAGAAATTGCAACAGAGATTACAACAAGTGTAGCAAGTAGCAAAACCTTTTACACCGATTCCAATGGACGCGATTTCATCGAAAGGATTCGAGACTATAGAAAAGACTGGAAATTGCAAGTAAATCAACCTGTTGCTGGAAATTATTACCCTATCAACCTTGGGATTTACCTGAAAGATAAAAGTAAAGAGCTCTCTATATTGGTAGATAGGTCTGTGGGGGGATCCAGCATCAAAGATGGGCAATTAGAACTAATGGTTCATAGGAGATTGCTTGTAGATGATTCTAGAGGCGTTGGCGAGCCGCTGAATGAAACAGTTTGCATCCATGATAAGTGTGCCGGATTAACTGTACTAGGGAAGTACTATTTCAAGATTGATCCTGTAGGAGACGGTGCGAGATGGCGTCGATCATTTGGTCAGGAGATATACTCGCCGTTTCTATTAGCCTTCACAGAGAGTGAAGGTAACTGGGGAGACTCTCATGTTACAACTTTCTCAGGAATAAATCCATCATACAGCTTGCCAGATAACATTGCAGTCATAACCCTTCAGGATCTAGGTGATGGAYAAGTTCTCKTAAGGCTTGCACACTTATATGAGGTTGGCGAGGACAAGTATCTCTCAGCTAAGGCAACTGTAGAACTCAAAAAGGTGTTCCACAACAAACAGGTTATCAAAATAAGTGAGATGAGCTTATCTGCAAACCAAGAAAGAGCAGAAATGGAGAGGAAGAGATTGGCATGGAAAGTCAAAGGATCAACTCAAGAACCACATATTTCAAGGGGAGGACCAGTTGATCCSCAAAAGCTTGTTGTAGAGCTTGCTCCAATGGAAATAAGGACCTTTATTATAAGTTTCAAGCATTAA 3084 0.4157 MCVCVFLVLGFFMMVATSTMESLLCSCLCVLVLLGCLISSTESKYIKYNTSSNIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSLVPALLADKNRRFIYVEQAFFQRWWREQSEAVQNIVKQLVNSGQLEFINGGMVMHDEATTHYIDMIDQTTLGHHFIKEEFGKTPRIGWQIDPFGHSAVQAYLLSAQVGFDSLFFARIDYQDRAKRKDEKSLEVVWQASKSLGSSQQIFSGAFPKNYEPPANFYYEVNDDSPIVQDDVNLFDYNVPERVNEFVAAAXSQANITRTNHIMWTMGTDFKYQYAHTWFRQLDKFIHYVNQDGRVHALYSTPSIYTDAKHAANEAWPIKTEDYFPYADVENGYWTGYFTSRPAIKGYVRFSSGYYLAARQLEYFKGKSGLGPKTDSLADALAIAQHHDAVSGTEKQHVANDYAKRLSIGYTEAEKVVAASLSYLTDAPKTGRQIKFQQCPLLNISYCPASETDFSNGKDLVVVVYNPLGWKREDVIRIPVVSEYVVVRDSSGKQIQSQLLPILDTFIGLRKYYTAAYLGVSSTVKPKYWLAFSATVPPLGFSTYYVSKAKQAATISDTYTPYKSRNQKDTIEVGPGNLKLIYSEKEAKLTEYINSKSKVKESIDQAYKYYSSYGDDGTQTSQPSGAYIFRPNGSSVPIKSDRKSPLTVFRGPIVHEVHQKISSWIYQITRLHKGKEHAEVEFIVGPIPTDDGVGKEIATEITTSVASSKTFYTDSNGRDFIERIRDYRKDWKLQVNQPVAGNYYPINLGIYLKDKSKELSILVDRSVGGSSIKDGQLELMVHRRLLVDDSRGVGEPLNETVCIHDKCAGLTVLGKYYFKIDPVGDGARWRRSFGQEIYSPFLLAFTESEGNWGDSHVTTFSGINPSYSLPDNIAVITLQDLGDGXVLXRLAHLYEVGEDKYLSAKATVELKKVFHNKQVIKISEMSLSANQERAEMERKRLAWKVKGSTQEPHISRGGPVDPQKLVVELAPMEIRTFIISFKH* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2373 1027 Pfam Glycosyl hydrolases family 38 C-terminal domain 619 835 IPR011682 GO:0004559|GO:0006013
Amo08g2373 1027 SUPERFAMILY Families 57/38 glycoside transferase middle domain 375 469 IPR028995 -
Amo08g2373 1027 CDD GH38N_AMII_LAM_like 59 335 - -
Amo08g2373 1027 SMART Alpha_mann_mid_2 376 450 IPR015341 GO:0004559|GO:0006013
Amo08g2373 1027 Gene3D - 901 1027 - -
Amo08g2373 1027 Gene3D Glycoside hydrolase 38, N terminal domain 59 339 IPR027291 -
Amo08g2373 1027 Pfam Alpha mannosidase middle domain 377 467 IPR015341 GO:0004559|GO:0006013
Amo08g2373 1027 Gene3D Glycoside hydrolase family 38, central domain 418 473 IPR037094 GO:0004559|GO:0006013
Amo08g2373 1027 Gene3D - 493 615 IPR013780 -
Amo08g2373 1027 Gene3D Glycoside hydrolase family 38, central domain 340 417 IPR037094 GO:0004559|GO:0006013
Amo08g2373 1027 PANTHER ALPHA-MANNOSIDASE 37 1026 - -
Amo08g2373 1027 Gene3D - 616 883 - -
Amo08g2373 1027 PANTHER ALPHA-MANNOSIDASE 37 1026 - -
Amo08g2373 1027 SUPERFAMILY Glycoside hydrolase/deacetylase 48 372 IPR011330 GO:0005975
Amo08g2373 1027 SUPERFAMILY Galactose mutarotase-like 477 1025 IPR011013 GO:0003824|GO:0005975|GO:0030246
Amo08g2373 1027 Pfam Glycosyl hydrolases family 38 N-terminal domain 60 371 IPR000602 GO:0004559|GO:0006013
Amo08g2373 1027 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 916 1022 IPR041147 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2373 Amo-Chr8 37184016 37192018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2373 24 939 Glycoside Hydrolase AT5G13980 68.182 0.0 1318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2373 K01191 - gmx:100798150 1733