Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2218 ATGTCTAAATTGAAATCTTCTTCATCATCTTCAATGTTACTTCCSCRSCTTKTSRRSTRTCTTCTCCTCATTGTTCCAACATTCTCAACATCAAGAAAAGTTCTTGATGAGAATCACCATGAAGGYATCATCAGAGTCAACCTTCGCCATGTTGACTCCGGCAAGAACCTAACCAAGCTGGAGCGTGTCCAACACGGCATGAAGCGCGCCAAGAGCCGCCTCCAGTGGCTCAACGCAATGGTAACAAAAAAACAATCCCAATTCTCTAAAAGCGAAGAACTAGATTCAGGTTCAGAATCATCTGAATCTGAATCTAGTTCTTCGCAAATCCAGTCTCCAATACACGTGGGGAACGGGGAGTACCTAATGGAACTAGCCATAGGTACTCCTCCAAAGTCGTACCCTGCGATATTGGACACTGGTAGCGACCTCATATGGACACAATGCCAGCCTTGTTCCCAATGTTACAAGCAACCAACACCTATCTTCGACCCCAAGAAATCTTCGAGTTTTTCGAAGCTTTCTTGCGGAAGCAATCTATGCAACGTTCTACCTTCCTCCAGCTGTAGCAGCGGCGGTGGCGGCGACAGCGACGGCTGCCAGTATATGTACTCATACGGAGATTATTCCGTCACACAAGGCGTTTTAGCAACCGAGACTTTCACTTTTGGCAGTTCTAAGATTAAAAGCATTGGATTTGGATGCGGCGAAGATAATCAAGGAAGTGGATTCGAACAAGCTTCCGGTTTAGTCGGACTAGGCCGGGGGCCATTATCGCTTGTTTCGCAGCTCAAAGAGCCGAAATTTTCGTATTGCTTACAATCCATTGATGATAGAAAAAACAGTGTTCTTTTGTTAGGATCATTGCCGAAAACGAAAAACGCGAAAGGAGCTGTAACGACACCGTTGCTTAAGAATCCGATGCAGCCTTCGTTTTACTTCCTTGATCTGCAAGGAATCTCGGTTGGTGGAACTCAATTGAGCATTGAGGAATCGACGTTTGAACTCGGCYATAACGGAAGTGGTGGCSTGATCATTGATTCAGGGACAACAATTACATACATTGAAGAAAATGCTTTTGATGCATTGAAGAAGGAGTTTGTTTCACAAATGGATTTGCCAGTGGATAATTCTGGATCAACYGGGCTTGATAATTACATGATTGGTGATGTGAATTTGGGTGTGGCGTGTTTGGCTATGGGTAGTTCTTCTACTGGCATGTCAATATTTGGAAARGTTCAACAGCAGAATTTGTTGGTGAATCATGATCTTCAGAAGGAGACTATTACTTTTGTTCCTACACAGTGTGATCGGGTTTAA 1320 0.4356 MSKLKSSSSSSMLLPXLXXXLLLIVPTFSTSRKVLDENHHEGIIRVNLRHVDSGKNLTKLERVQHGMKRAKSRLQWLNAMVTKKQSQFSKSEELDSGSESSESESSSSQIQSPIHVGNGEYLMELAIGTPPKSYPAILDTGSDLIWTQCQPCSQCYKQPTPIFDPKKSSSFSKLSCGSNLCNVLPSSSCSSGGGGDSDGCQYMYSYGDYSVTQGVLATETFTFGSSKIKSIGFGCGEDNQGSGFEQASGLVGLGRGPLSLVSQLKEPKFSYCLQSIDDRKNSVLLLGSLPKTKNAKGAVTTPLLKNPMQPSFYFLDLQGISVGGTQLSIEESTFELGXNGSGGXIIDSGTTITYIEENAFDALKKEFVSQMDLPVDNSGSTGLDNYMIGDVNLGVACLAMGSSSTGMSIFGKVQQQNLLVNHDLQKETITFVPTQCDRV* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2218 439 Pfam Xylanase inhibitor C-terminal 313 373 IPR032799 -
Amo08g2218 439 Pfam Xylanase inhibitor C-terminal 388 432 IPR032799 -
Amo08g2218 439 PANTHER OS07G0603500 PROTEIN-RELATED 384 438 - -
Amo08g2218 439 Pfam Xylanase inhibitor N-terminal 121 288 IPR032861 -
Amo08g2218 439 Gene3D Acid Proteases 95 287 IPR021109 -
Amo08g2218 439 PANTHER OS07G0603500 PROTEIN-RELATED 21 384 - -
Amo08g2218 439 MobiDBLite consensus disorder prediction 88 112 - -
Amo08g2218 439 PRINTS Pepsin (A1) aspartic protease family signature 127 147 IPR001461 GO:0004190|GO:0006508
Amo08g2218 439 PRINTS Pepsin (A1) aspartic protease family signature 344 355 IPR001461 GO:0004190|GO:0006508
Amo08g2218 439 Gene3D Acid Proteases 381 438 IPR021109 -
Amo08g2218 439 PANTHER OS08G0469000 PROTEIN 21 384 - -
Amo08g2218 439 PANTHER OS08G0469000 PROTEIN 384 438 - -
Amo08g2218 439 ProSiteProfiles Peptidase family A1 domain profile. 121 439 IPR033121 -
Amo08g2218 439 Gene3D Acid Proteases 288 380 IPR021109 -
Amo08g2218 439 SUPERFAMILY Acid proteases 113 438 IPR021109 -
Amo08g2218 439 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 136 147 IPR001969 GO:0004190|GO:0006508
Amo08g2218 439 CDD pepsin_A_like_plant 120 436 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2218 Amo-Chr8 35241786 35243198 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2218 87 439 Miscellaneous Gene Families AT1G77480 24.519 5.11e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2218 - - adu:107463277 728.013