Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2137 ATGAAGCACACTTCCTCCGAGGCACTCCCTTCTCTCCCCTCCGCACCTCCTTCGTCCGACCAATCACAACCTGCCACGTCATCATCATCCTCCGCTTCCTCATCGGACAAACCCTCGCCTTCATCCTCCTCCGCCGCCGCTGCGGAGGACCTCGCCGTAACCACCCGTGACGGAGGCGGCGGGGCCGCCGCACAGGAGACCGTCGTCGTCGATCGCCGTGGCGAGCACGCCGCAGTGTGCCGATGGACGGTGCAAAATTTCCCGCGAGTGAAGGCACGCGCCCTTTGGAGCAAGTACTTCGAGGTAGGAGGATACGATTGCCGGTTATTGGTGTACCCTAAGGGCGATTCGCAAGCTCTTCCAGGTTACATCTCAATCTATCTTCAAATCATGGACCCTCGCGGCACCTCTTCTTCCAAATGGGACTGTTTCGCCAGTTACCGTCTCGCAATCGTTAACCTCGCCGACGATTCCAAAACCATACACCGCGATTCTTGGCATCGATTCTCCAGCAAGAAGAAATCTCACGGTTGGTGCGATTTCACGCCTTCTTCAACCGTCTTCGATCCCAAACTAGGTTACCTAAACGCCGCCAATGACGGCGTTTTGATCACGGCCGACATACTCATCCTCAACGAGTCCGTTAACTTCACGCGCGATAACAACGAGGTCCAGTCTTCGTCCTCGTTGTCGTCCGGTTCGGCCGCAAGCTCTTCCGTCGTTGCTGGGCCGGTTTCGGATGTTCTGAGTGGAAAGTTCACTTGGAAGGTGCACAATTTTAGTTTGTTTAAGGAGATGATTAAGACGCAGAAGATAATGAGCCCTGTTTTCCCTGCTGGCGAGTGTAATTTGAGGATTAGTGTGTATCAGAGTTCGGTGAATGGTGTTGAGTATTTGTCAATGTGTTTGGAGAGTAAGGACACTGATAAGACTGTGATGTTGTCTGATAGGAGTTGCTGGTGTTTGTTTAGGATGTCTGTGTTGAACCAGAAGCCCGGTTTGAATCATATGCATAGGGATTCGTATGGGAGGTTCGCTGCGGATAATAAGAGTGGCGATAACACGAGTTTGGGGTGGAATGATTATATGAAAATGTCAGATTTCATAGGGACTGATTCAGGGTTCTTGGTTGATGATACTGCAGTGTTTAGCACATCGTTTCATGTGATTAAGGAGTTTAGTAGCTTCTCCAAGAATGGGGCTATGATTGCTGGGAGGAGCGTGGGTGGGGCGAGGAAGTCCGATGGCCATATCGGCAAGTTCACTTGGAGGATTGAAAATTTTACCAGATTGAAGGATTTGCTGAAGAAGAGGAAGATTACTGGCCTTTGCATCAAGAGCAGGAGGTTTCAGATTGGTAACCGGGATTGTCGTCTTATTGTTTATCCCAGAGGGCAGTCCCAGCCACCATGCCACCTTTCAGTGTTTCTTGAAGTTACAGATTCTAGGAATACTTCCAGTGATTGGAGTTGTTTTGTTAGTCATCGTTTGTCAGTTGTGAACCAGAGGATGGAGGATAAGTCTGTCACCAAGGAATCTCAGAACCGCTACTCCAAAGCTGCAAAGGATTGGGGCTGGCGTGAATTTGTGACACTTACAAGTCTCTTTGATCAAGATTCTGGTTTTCTTGTCCAGGACACTGTTATATTCTCTGCTGAAGTTCTTATATTGAAAGAGACATCAATAATGCAAGATTTTACCGATAATGATTCTGAATTGAGCAATGGTGGTTCCCTTGTTGATAGTTTTGGGAAAAGAAGTTCGTTTACATGGAAAGTGGAGAATTTCCTGTCTTTTAAGGAAATCATGGAGACTCGGAAAATCTTCAGTAAATTCTTTCAGGCTGGTGGATGTGAACTTCGGATCGGTGTCTACGAGTCCTTTGATACAATATGTATTTATTTAGAGAGTGACCAGGCTGTCGGTAGCGATCCTGATAAAAACTTCTGGGTCAGATACAGGATGGCTGTTGTGAATCAGAAAAATCCGGCCAAGACAGTGTGGAAAGAATCCTCTATCTGCACAAAGACGTGGAATAATTCCGTTTTACAATTCATGAAGGTCTCAGATATGCTAGAAGCAGATGCAGGGTTTCTTGTCCGTGACACCGTTGTTTTTGTATGCGAAATATTGGACTGCTGCCCTTGGTTTGATTTTGCTGATCTAGAGGTGTTGGCATCAGAGGATGATCAGGATGCATTGACAACTGATCCTGATGAGCTCATTGACTCTGAAGACAGTGAAGGGATAAGTGGAGATGAGGAAGATATTTTCAGAAATCTTCTTTCCCGAGCTGGATTCCATCTGTCATATGGAGATAATCCTTCACAGCCACAGGTTACTTTACGAGAGAAACTTTTAATGGATGCTGGTGCAATTGCTGGGTTTCTGACTGGACTTCGGGTTTATCTTGATGATCCTGCTAAAGTAAAGCGCTTGCTTCTTCCTACCAAGCTCTCTGGTAACTGTGATGGGAATAAGACCAGCAAGGCTGATGAGTCTTCACCTAGTTTGATGAATTTGCTGATGGGAGTTAAAGTATTGCAGCAAGCAATCATTGATTTACTACTGGATATAATGGTTGAATGCTGCCAGCCTTCTGAAGGGGTTCCTGTTGCTGATTCTGTTGATGCATGCTCGAAACCTCCAGATGGCAGTGGAGCTGCTAGTCCTCTTGAGTGTGATAGAGAAAATGGAGCAATTGAGTCAATCCAAGTTCCTGTTTATGAGAGGTTGGATTCTGTTGTTGAAGAGAGTGGCGGTACATCTGCTGTGCAGAGCTCTGATTTAAATGGGAATGTTATTCAGGAAAAGGCTGTTCCTGGACAACCTATTTGTCCACCAGAAACATCTGCTGCTGGTTCAGATAATGCAACTTTACGGTCAAAGACAAAATGGCCAGAACAGTCTGAGGAGCTCCTGGGATTGATTGTGAACTCACTTAGAGCTTTGGATGGAGCTGTTCCGCAAGGATGTCCAGAGCCAAGACGACGACCTCAGTCTGCACAGAAAATTGCTCTTGTATTGGACAAAGCTCCTAAGCATTTGCAAGCAGACCTTGTTGCACTGGTGCCAAAATTGGTTGAGCTGTCAGAACACCCACTGGCTGCCTGTGCACTTCTTGAGCGACTACAAAAGCCAGATGCAGAACCTTCTTTACGAATACCTGTGTTTGAAGCTCTTAATCAACTGGAGTGTGGTAGTGAAGTGTGGGAACGCATTCTGTTTCAGTCGTTTGAACTTTTGACAGATTCAAATGATGAACCCCTTGCTGCGACGATAGATTTTATATTCAAAGCAGCATCTCAATGTCAACACTTACCTGAAGCAGTTAGGTCTGTTCGTGTAAGGCTGAAAAATCTTGGTCTTGTTGTGTCGCCTTGTGTCCTTGACTTCTTGAGCAAGACTATAAATAGTTGGGGTGATGTTGCTGAAACCATACTTAGGGACATTGATTGTGATGATGATTATGGTGACAGTTGCTCAGCTCTGCCATGTGGGATTTTTTTATTTGGTGAACACAGCACCACTACTGCCGGACTTCATGTGATTGATGAGCAGACTTTTCGTGCTAGTCGTCATTTTTCTGATATATACATACTGTTTGAGATGTTATCCATTCCTTGTCTTGCTGTTGAAGCCTCTCAAACATTTGAGAAAGCTGTAGCTCGAGGTGTAATAGGGGCTCAGTCTGTAGCCTTAGTATTGGAAAGCCGCCTTTCTCAAAGATTGAGTAATGGTGCCAGATATGTTTCTGAAAATTTTCAGCATCCAGAGGGTGCATCAGAGGGAGATGTAAGTGAGCAACTTGTAGTTCAAAGGGAGGATTTTACTTCAGTTCTTGGTCTTGCTGAAACTTTGGCCCTTTCGAAAGACCAATGTGTGAGGGAATTTGTGAAGTTGCTTTACACGATATTGTTTAGATGGTATGCCAATGAATCTTACCGGGGGAGGATGCTGAAGAGGCTTGTTGACCGTGCCACTAGTACAGCAGATGCCGGTCGTGAAGTAGATTTTGATTTGGATGTCTTAGTTACTTTAGTCTGTGAGGAGGAGGAGATTATTCGACCTGTTTTGAGTATGATCCGTGAAGTTGCTGAACTTGCAAATGTTGACCGGGCTGCTCTGTGGCACCAGTTATGCGCTAGTGAAGATGAAATTATTCGTGTTCGTGAAGAAAGCAAAATTGAGATTTCTAATATGGCTAAGGAAAAAGCTATTATAGCACAAAAACTGAGTGAATCCGAGGCCACAAGCAATCGCCTCAAGTCTGAAATGAGGACTGAGATGGATCGGTTTTCTCGAGAAAAGAAGGAAATATTAGAACAGGTTCAAGAAGTTGAGAGTCAGCTTGAGTGGCTTCGTTCGGAGCGGGATGAAGAAATAACAAAGCTTTCTGCGGAGAAGAAAGTTCTTCAGGACCGTTTACACGATGCAGAGACACAAATTTCTCAGTTAAAATCTCGAAAACGTGATGAATTGAAGAAAGTAGTAAAAGAGAAGAATGCACTGGCTGAAAGATTGAAAAATGCTGAAGCTGCACGCAAGAGATTTGATGAAGAACTGAAAAGATTTGCAACAGAGAATGTAACACGGGAAGAAATCCGGCAATCACTTGAGGATGAAGTCCGTAGACTGACTCAAACAGTAGGGCAAACCGAGGGAGAAAAGCGGGAGAAGGAAGAGCAGGTTGCTAGGTGTGAAGCATATATTGATGGCATGGAATCTAAGTTGCAAGCCTGCCAGCAATATATTCACACGCTAGAGGCCTCCCTCCAGGAGGAAATGTCGCGACATGCCCCTCTGTATGGTGCCGGTCTGGAAGCTCTATCAATGAAGGAGTTGGAAACACTATCACGTATTCATGAAGATGGGCTGAGGCAGATCCACGCCCTTCAACAGCGTAAAGGGAGTCCTGCCGGGAGTCCACTTATGAGCCCCCATGGCCATGGTCTCCCCCACAGCCACGGATTATATCCTGCTGCATCTCTGCCGATGGCCGTTGGGATGCCCCCACAAATCATCCCAAATGGGGTAGGGATCCATAGCAATGGCCATGTGAATGGTGCAGTTGGACCTTGGTTTAATCACACTTGA 5097 0.4587 MKHTSSEALPSLPSAPPSSDQSQPATSSSSSASSSDKPSPSSSSAAAAEDLAVTTRDGGGGAAAQETVVVDRRGEHAAVCRWTVQNFPRVKARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLADDSKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDPKLGYLNAANDGVLITADILILNESVNFTRDNNEVQSSSSLSSGSAASSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTDKTVMLSDRSCWCLFRMSVLNQKPGLNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGTDSGFLVDDTAVFSTSFHVIKEFSSFSKNGAMIAGRSVGGARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQRMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDFTDNDSELSNGGSLVDSFGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFDFADLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLSYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGNCDGNKTSKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGVPVADSVDACSKPPDGSGAASPLECDRENGAIESIQVPVYERLDSVVEESGGTSAVQSSDLNGNVIQEKAVPGQPICPPETSAAGSDNATLRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLQADLVALVPKLVELSEHPLAACALLERLQKPDAEPSLRIPVFEALNQLECGSEVWERILFQSFELLTDSNDEPLAATIDFIFKAASQCQHLPEAVRSVRVRLKNLGLVVSPCVLDFLSKTINSWGDVAETILRDIDCDDDYGDSCSALPCGIFLFGEHSTTTAGLHVIDEQTFRASRHFSDIYILFEMLSIPCLAVEASQTFEKAVARGVIGAQSVALVLESRLSQRLSNGARYVSENFQHPEGASEGDVSEQLVVQREDFTSVLGLAETLALSKDQCVREFVKLLYTILFRWYANESYRGRMLKRLVDRATSTADAGREVDFDLDVLVTLVCEEEEIIRPVLSMIREVAELANVDRAALWHQLCASEDEIIRVREESKIEISNMAKEKAIIAQKLSESEATSNRLKSEMRTEMDRFSREKKEILEQVQEVESQLEWLRSERDEEITKLSAEKKVLQDRLHDAETQISQLKSRKRDELKKVVKEKNALAERLKNAEAARKRFDEELKRFATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSMKELETLSRIHEDGLRQIHALQQRKGSPAGSPLMSPHGHGLPHSHGLYPAASLPMAVGMPPQIIPNGVGIHSNGHVNGAVGPWFNHT* 1699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2137 1698 SMART math_3 255 368 IPR002083 GO:0005515
Amo08g2137 1698 SMART math_3 423 535 IPR002083 GO:0005515
Amo08g2137 1698 SMART math_3 79 187 IPR002083 GO:0005515
Amo08g2137 1698 SMART math_3 591 691 IPR002083 GO:0005515
Amo08g2137 1698 Coils Coil 1423 1528 - -
Amo08g2137 1698 MobiDBLite consensus disorder prediction 950 964 - -
Amo08g2137 1698 ProSiteProfiles MATH/TRAF domain profile. 418 554 IPR002083 GO:0005515
Amo08g2137 1698 MobiDBLite consensus disorder prediction 1 48 - -
Amo08g2137 1698 SUPERFAMILY TRAF domain-like 419 560 - -
Amo08g2137 1698 Gene3D - 1454 1646 - -
Amo08g2137 1698 ProSiteProfiles MATH/TRAF domain profile. 77 208 IPR002083 GO:0005515
Amo08g2137 1698 PANTHER TRAF-LIKE FAMILY PROTEIN 38 1698 - -
Amo08g2137 1698 CDD MATH 588 710 IPR002083 GO:0005515
Amo08g2137 1698 CDD MATH 81 208 IPR002083 GO:0005515
Amo08g2137 1698 ProSiteProfiles MATH/TRAF domain profile. 250 387 IPR002083 GO:0005515
Amo08g2137 1698 SUPERFAMILY TRAF domain-like 79 216 - -
Amo08g2137 1698 Coils Coil 1536 1563 - -
Amo08g2137 1698 MobiDBLite consensus disorder prediction 940 965 - -
Amo08g2137 1698 Pfam MATH domain 450 556 IPR002083 GO:0005515
Amo08g2137 1698 Pfam MATH domain 599 706 IPR002083 GO:0005515
Amo08g2137 1698 Pfam MATH domain 86 208 IPR002083 GO:0005515
Amo08g2137 1698 SUPERFAMILY TRAF domain-like 248 393 - -
Amo08g2137 1698 SUPERFAMILY TRAF domain-like 587 711 - -
Amo08g2137 1698 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 246 393 IPR008974 GO:0005515
Amo08g2137 1698 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 411 563 IPR008974 GO:0005515
Amo08g2137 1698 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 580 712 IPR008974 GO:0005515
Amo08g2137 1698 CDD MATH 419 554 IPR002083 GO:0005515
Amo08g2137 1698 CDD MATH 251 383 IPR002083 GO:0005515
Amo08g2137 1698 PANTHER TRAF-LIKE FAMILY PROTEIN 38 1698 - -
Amo08g2137 1698 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 74 225 IPR008974 GO:0005515
Amo08g2137 1698 MobiDBLite consensus disorder prediction 1632 1657 - -
Amo08g2137 1698 ProSiteProfiles MATH/TRAF domain profile. 586 710 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2137 Amo-Chr8 34241233 34250140 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2137 - - gmx:100788511 2944.45